Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3748 ATGGTGACTTTACTTGATGAAAATTTCTCTTTCCACCAACACAATTTCTCCCCCACAGGTAAGAAGAATAGCTCCGTTTCTGTAGTTATTTCCAACCCCAGAGTCCTCGATTGCTCCCATTGTTTTCAACTCTTAACTATTCCACTCTTTCAGTGTGATAATGATCATCTTGTTTGCTCTACCTGCTGTGCTAAAATTAAGAACAAATGTCGCAAGTGTGCATCGCAAATTAACTCAAAACATTGTAAAGCCATTGAGAATATATTGCAATCTACGAAAACGCCATGTCCGAATCAAAAACACGGTTGCAGGGAGACAATTAGTTACAGTAGAAAGAGGAAGCATGAAGAATGCATCCATGAGCCATGTTGCTGCCCCCTTTCAGGTTGTGACTTTGTTGCCTCATCAGAAGAATTGTCCACCCATTTCAGCCATAAACACGAGGATTCTCAAATCAAATTTTCTTATGGTCACTCTTTTAAGGTGTCCTTGAAGTCTAATGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAATAATAGTACTATGCTTCTAGGAAATGCAGTCAATATTCAAATCTACATAATGACCAGGTATGGGAAGAGGATCCCCCTGATGGTTGAGAGTTCAGACACAATAGTCAATGTGAAGAAGAAGATTCTTGACAAGGAAGGGATCGAAGTGGACCTGCAATATCTGCATATTGCCGGTAAGCAACTAGATGACTGCCTGACCGTTGCAAATTACAACATCCAAGATAAGTCAACCCTCGACCTCGGCATCCGCATGATTGGGGACTAG 819 0.4054 MVTLLDENFSFHQHNFSPTGKKNSSVSVVISNPRVLDCSHCFQLLTIPLFQCDNDHLVCSTCCAKIKNKCRKCASQINSKHCKAIENILQSTKTPCPNQKHGCRETISYSRKRKHEECIHEPCCCPLSGCDFVASSEELSTHFSHKHEDSQIKFSYGHSFKVSLKSNDETIVLQEENDGKLFILNNSTMLLGNAVNIQIYIMTRYGKRIPLMVESSDTIVNVKKKILDKEGIEVDLQYLHIAGKQLDDCLTVANYNIQDKSTLDLGIRMIGD* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3748 272 SUPERFAMILY TRAF domain-like 93 186 - -
Mal5g3748 272 Gene3D - 196 266 - -
Mal5g3748 272 SMART ubq_7 197 268 IPR000626 GO:0005515
Mal5g3748 272 ProSiteProfiles Ubiquitin domain profile. 197 272 IPR000626 GO:0005515
Mal5g3748 272 Pfam Ubiquitin family 203 268 IPR000626 GO:0005515
Mal5g3748 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 143 IPR013083 -
Mal5g3748 272 ProSiteProfiles Zinc finger SIAH-type profile. 91 148 IPR013010 GO:0008270
Mal5g3748 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 200 IPR044286 -
Mal5g3748 272 Pfam Seven in absentia protein family 83 169 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal5g3748 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 16 200 - -
Mal5g3748 272 SUPERFAMILY Ubiquitin-like 194 267 IPR029071 -
Mal5g3748 272 PRINTS Ubiquitin signature 249 270 IPR019956 -
Mal5g3748 272 PRINTS Ubiquitin signature 207 227 IPR019956 -
Mal5g3748 272 PRINTS Ubiquitin signature 228 248 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3748 Mal-Chr5 105584916 105587013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3748 197 271 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 60.000 7.78e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3748 K04506 - gmx:100778869 200.675