Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3727 ATGGGTCTTAAAAATCAAGATGGCAATAACAACTCGGGCCTTCAACTTATTCTAGGCTTAGCTCTCACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAACCTTATACCTCAAGCAATATTAACTATGAGGCTGAACCATCTTTAACGTTGGGTTTATCCACTAAAAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCATAGCGTTGTTTCCTCTTTCTCTAGTGGTAGGGTGAAGAGAGAAAGAGATGTTAGCAGCGAGTTAGAAATGGAAGCAACAGAGACAGAGAGAGTTTCTTCAAGAATCAGTGACGAAGATGAAGACGGTGCCACCGCAGCTAGGAAGAAGCTTAGGCTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGCTTCAAAGAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTTACACCTCGTCAAGTTGAGGTGTGGTTCCAGAACCGCCGAGCCAGAACAAAGCTGAAGCAAACAGAGGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGATGAAAATAGAAGGCTTCAAAAGGAGGTGCAAGAATTGAAGGCACTGAAACTAGCACAACCCTTGTATATGCCTATGCCAGCTGCTACCCTTACTATGTGCCCTTCTTGTGAGAGACTAGGTGGTGGTGGTGGTGTTAATGGTGGTGCTTCTAATAAGAGCAATTTCTCAATGGCTCCTAAGCCTCACTTTTACAATCCCTTCACAAATTCTTCAGCAGCATGTTGA 822 0.4209 MGLKNQDGNNNSGLQLILGLALTLTKQDTPPSNNNVTKPYTSSNINYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMEATETERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGGVNGGASNKSNFSMAPKPHFYNPFTNSSAAC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3727 273 Pfam Homeobox associated leucine zipper 181 215 IPR003106 GO:0006355|GO:0043565
Mal5g3727 273 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Mal5g3727 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 16 273 - -
Mal5g3727 273 Pfam Homeodomain 125 179 IPR001356 GO:0003677
Mal5g3727 273 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Mal5g3727 273 SMART HOX_1 123 185 IPR001356 GO:0003677
Mal5g3727 273 PANTHER - 16 273 - -
Mal5g3727 273 Gene3D - 129 179 - -
Mal5g3727 273 SMART halz 181 224 IPR003106 GO:0006355|GO:0043565
Mal5g3727 273 SUPERFAMILY Homeodomain-like 119 182 IPR009057 -
Mal5g3727 273 Coils Coil 187 217 - -
Mal5g3727 273 CDD homeodomain 125 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3727 Mal-Chr5 105251149 105252600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3727 1 273 Homeobox Transcription Factor Family AT4G37790 60.764 1.11e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g3727 Homeodomain 1.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1435 6 26015022 26016701 Mal5g3727 5 105251149 105252600 PCT