Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3724 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGTCCATGGTCACCTGAAGAAGATTCCAAACTCAAAGCCTATATCCAACAACATGGTACTGGTGGCAACTGGATAGCCCTGCCCAAGAAAATAGGCCTCAAAAGATGCGGAAAAAGTTGTCGTCTTAGATGGCTAAATTATCTTCGTCCAAACCTTAAACATGGGAGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTCTATGTCAATATTGGTAGCAGGTGGTCCATTATAGCAGCGCAGTTACCCGGACGAACAGATAATGATATAAAGAACTACTGGAACACAAAGTTGAAGAAGAAACTTTTAACAAAGCAAAGGAAAGAGCAACAATCTCAAGCTCGCCGAGTTTTCAGCTTAAACCAAGAGATCAAGAGAGAAAGTGGAAATTTGGTATTGCCTGTTGATGTTAATTTCAGTCAAACTCAAAATTATTGGCCAACAGAACACAATACCTTTCCCAGTCCATTAACAAATGCTTCTTCCATCCAAGACTATAACCTCAATGAAGTTGAATTCTTTGATAATCATCAACTCCAACCAGTGAATCCAAACATTAATTCTCAATACCCATGTGACATTTACTTCCAACAAGATCAACTATGTTATCCACCTACAATGAACAACATAAACTCTGCAGGGTTGGCCTATGTGAACCAGATGCAACAAATAGATGGATCAGTATCAACTTCAACAGAAAGCACTAGTTGGGGAGATATGAGTTCTTTGGTTCACTCACCTTTGGTTTCTGATTATGAAGGTTGCCACCAACAAACAATGATTCAAGAAGATGTTACTTTTGAGGAGTCTATGTTTTATGGAATGATCCAAACACAATAA 885 0.3898 MGRAPCCDKANVKRGPWSPEEDSKLKAYIQQHGTGGNWIALPKKIGLKRCGKSCRLRWLNYLRPNLKHGSFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLTKQRKEQQSQARRVFSLNQEIKRESGNLVLPVDVNFSQTQNYWPTEHNTFPSPLTNASSIQDYNLNEVEFFDNHQLQPVNPNINSQYPCDIYFQQDQLCYPPTMNNINSAGLAYVNQMQQIDGSVSTSTESTSWGDMSSLVHSPLVSDYEGCHQQTMIQEDVTFEESMFYGMIQTQ* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3724 294 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mal5g3724 294 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal5g3724 294 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal5g3724 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mal5g3724 294 PANTHER OS09G0431300 PROTEIN 1 228 - -
Mal5g3724 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mal5g3724 294 CDD SANT 16 62 IPR001005 -
Mal5g3724 294 Gene3D - 69 140 - -
Mal5g3724 294 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal5g3724 294 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mal5g3724 294 CDD SANT 70 110 IPR001005 -
Mal5g3724 294 Gene3D - 7 68 - -
Mal5g3724 294 SMART sant 13 64 IPR001005 -
Mal5g3724 294 SMART sant 67 115 IPR001005 -
Mal5g3724 294 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3724 Mal-Chr5 105191349 105192473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3724 1 261 MYB Transcription Factor Family AT3G49690 46.382 1.34e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g3724 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3724 K09422 - gmx:100791406 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1433 6 25956726 25958195 Mal5g3724 5 105191349 105192473 PCT