Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3693 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCACTGAAAGCTGGAGTAGTCAAACACGGGGCAGGAAAATGGCGCACTATACTTATGGATCCTGAGTTCAGTTCCATTTTGCGTATGCGTTCAAATGTTGACCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAGCCTTCCAGTCCCTAAAATTGACAACAACCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACATTCTTGATATTAAGCCCCTGACAATTTCTGGTGGAGCATTGCAATCTCCTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTAACAATTTCTGGTGGAACATTGCAATCTCCTAATTCAAAAGAACAAGTATCAAGGTTGGGAGATAATCATGTGTTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTACTTCTTACATAGCGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCGAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCATAAGTACAAAATTATGCCAAGTTCAGCAGTCTGTGAGAAAAGAGGAAGCTCTTCTCTGATGCTCGTGGAAGCGAGGCCGGAAGTGGAGAAGATTGGTGATATCAACATCCTTTCAAAATCCCAAATTGATGCAGAGCTATCCAAAGTGAAGGGGATGACAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGTTGCCATTGCACAGGCCGAGGCAGCAGCTAGGGAGGCAGAGATCGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGAAGAAGGCGTTAAAATCCAAAATGCTTCATATTTGGTAG 996 0.4498 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKSLPVPKIDNNQLALSKVVQREDILDIKPLTISGGALQSPKPLTISGGTLQSPKPLTISGGTLQSPKPLTISGGTLQSPNSKEQVSRLGDNHVLEAIVNMKEPKGSDKAAITSYIAEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVCEKRGSSSLMLVEARPEVEKIGDINILSKSQIDAELSKVKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAKKALKSKMLHIW* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3693 331 SMART h15plus2 162 221 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g3693 331 PANTHER MYB TRANSCRIPTION FACTOR 1 113 - -
Mal5g3693 331 SMART sant 4 59 IPR001005 -
Mal5g3693 331 Gene3D - 8 87 - -
Mal5g3693 331 PANTHER SINGLE MYB HISTONE 4 1 113 IPR044597 GO:0003691
Mal5g3693 331 Coils Coil 278 317 - -
Mal5g3693 331 SUPERFAMILY "Winged helix" DNA-binding domain 164 233 IPR036390 -
Mal5g3693 331 CDD SANT_TRF 6 57 - -
Mal5g3693 331 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Mal5g3693 331 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mal5g3693 331 PANTHER SINGLE MYB HISTONE 4 139 330 IPR044597 GO:0003691
Mal5g3693 331 Gene3D - 163 237 IPR036388 -
Mal5g3693 331 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mal5g3693 331 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 157 226 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g3693 331 Pfam linker histone H1 and H5 family 166 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g3693 331 PANTHER MYB TRANSCRIPTION FACTOR 139 330 - -
Mal5g3693 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3693 Mal-Chr5 104654670 104657751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3693 1 331 Single Myb Histone (SMH) Gene Family AT5G67580 46.429 2.07e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal5g3693 Linker_histone 6.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3693 K09422 - gmx:100779583 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1411 6 25327438 25330330 Mal5g3693 5 104654670 104657751 PCT