Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3679 ATGAGTTGCAATGGGTGCCGTGTTCTTCGAAAGGGTTGCAGTGAGACATGTATTTTACGACCTTGTTTACAATGGATTGAAACCCCAGAAGCTCAAGGCCACGCCACCGTTTTCGTAGCAAAATTCTTTGGTCGCGCTGGTCTCATGTCCTTCATTTCCAACGTCCCTGAACCTCAGAGACCAGCTTTGTTTCAGTCTCTACTATTTGAAGCGTGTGGAAGAACAGTTAACCCTGTGAACGGTGCTGTTGGACTTCTCTGGACTGGAAACTGGCACGTGTGTCAAGCAGCGGTGGAGACGGTTCTTCGCGGCGGGACGCTTAGGCCTTTACCGGAGCTAACACTTCTCGACGCGCCACTCACTGCTACAGACGAGGCATCGGAGGCGGAAGACGGTGGTGCGGATGCTATCTGGAGGATCCGAGATCCGCGATCTAGTAATAAGGTGTGTTCTGGAAGCAAACGGAGACGATCGGAGGAGTTTGTTAAGGTTCCGGCGGCGATTAATCTTGATCTACGATTGACGCCGATTTTTCAACAGAAGGCGGTGGAGGAACGACGGCCGGGTTCGCCGTCGATGACGTCAGAGGAATCGGTGACGACGACGGCGTGTTTGGAGACTGGGATCGGAGATCGGTGGAGTCACGGTGGTGATCGGAAAGTTCTCAACCTTTTCATATGA 681 0.5257 MSCNGCRVLRKGCSETCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELTLLDAPLTATDEASEAEDGGADAIWRIRDPRSSNKVCSGSKRRRSEEFVKVPAAINLDLRLTPIFQQKAVEERRPGSPSMTSEESVTTTACLETGIGDRWSHGGDRKVLNLFI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3679 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 226 - -
Mal5g3679 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 226 - -
Mal5g3679 226 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Mal5g3679 226 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3679 Mal-Chr5 104390866 104391621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3679 1 225 AS2 family AT3G49940 57.661 1.13e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g3679 LOB 8.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3679 - - gmx:100816189 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1385 6 24829197 24830058 Mal5g3679 5 104390866 104391621 ECH
Mal5g3679 5 104390866 104391621 Mal5g3679 5 104390866 104391621 ECH
Mal5g3679 5 104390866 104391621 Mal6g1385 6 24829197 24830058 PCT