LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g3655	ATGTATCCAAATTCACAAGAACAATCACAACCACTGATAGTGGAAGACCAACCACAAGAAACAGCATATGATTCATCAGAAAAGATTATAGTAGTTGGAATAGACGAATCAACAAACTGGGGTACCTCAGTTCCACCGTTTTCATGGAAGAAGCTATGGCTATTCACAGGTCCAGGTTTTCTAATGAGCATAGCGTTTTTGGATCCAGGGAACTTAGAAGGAGACCTACAAGCTGGTGCCATTGCAGGGTATTCTTTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCTAGGCTTGGTGTGGCTACAGGGAAGCATTTGGCTGAGTTGTGTAGGGATGAGTACCCTAGGTGGGCTAGGTATGTGCTATGGGTTATGGCTGAGTTTGCTCTTATTGGTTCTGATATACAAGAGGTTATTGGTAGTGCTATTGCTATTAGGATTCTTAGTAATGGGACTATTCCTCTTTGGGCTGGTGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGGCATTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTAATGGCACTTGCTTTTGCATGGATGTTTGGTGAGGCAAAGCCAAGTGGCAAGGAACTTATAGTTGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGATGTCTTATAATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAGTCAAGGCAAGTTGATCACGGCAACAAAGGCCGAGTTCAAGAAGCGCTTAACTATTACTCAATAGAGTCTACCCTTGCCCTGATAGTCTCCTTTATCATTAACATATTTGTCACAGCTGTGTTTGCGAAGGGGTTTTATGGCTCTGAAATAGCAAATAAAATAGGCCTTGAAAATGCAGGACAGTATCTTCAGGAGACATATGGAGGTGGAGTTTTTCCCATATTGTATATATGGGGTATTGGGTTGTTAGCAGCTGGTCAAAGTAGCACTATAACTGGTACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAAGTTGAAGAAATGGATGAGGGCATTAATTACTCGTAGTTTTGCAATAGTCCCAACCATGATAGTTGCTCTTATGTTTGATGCTACGGAGGACTCACTAGATGTTCTGAATGAATGGCTTAATGTGCTTCAGTCGGTTCAAATTCCCTTTGCGCTTATTCCCTTGCTTTGTCTTGTGTCGAAGGAGCAGATAATGGGCACGTTCAAAATTGGCCCTGTCCTCAAGATTTTTTCGTGGTCTGTGGCTGCTCTTGTGACAGTAATTAATGGCTATCTGTTGCTGGAATTCTTCTCAGCTGAAGTGAATGGAATAATAGTTGGTGCTGTAGTGTGTGCAATAACTGCTGCATATGTTGCATTCATAATATATCTTATTCTGCGGGCGACTACATTTTCGCCTTGGCAAAGCGCAACACGACCAATGGCAATACTTCCCTCGGATAGTTGA	1536	0.4186	MYPNSQEQSQPLIVEDQPQETAYDSSEKIIVVGIDESTNWGTSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCRDEYPRWARYVLWVMAEFALIGSDIQEVIGSAIAIRILSNGTIPLWAGVVITALDCFIFLFLENYGVRALEAFFAVLIGVMALAFAWMFGEAKPSGKELIVGILVPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDHGNKGRVQEALNYYSIESTLALIVSFIINIFVTAVFAKGFYGSEIANKIGLENAGQYLQETYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALMFDATEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGPVLKIFSWSVAALVTVINGYLLLEFFSAEVNGIIVGAVVCAITAAYVAFIIYLILRATTFSPWQSATRPMAILPSDS*	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g3655	511	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	50	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	11	505	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	Hamap	Divalent metal cation transporter MntH [mntH].	37	460	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	186	207	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	342	361	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	131	157	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	370	387	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	161	180	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	235	258	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PRINTS	Natural resistance-associated macrophage protein signature	404	423	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	Pfam	Natural resistance-associated macrophage protein	73	434	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mal5g3655	511	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	11	505	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g3655	Mal-Chr5	103779018	103782131	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g3655	45	497	Inorganic Solute Cotransporters	AT2G23150	81.898	0.0	767

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g3655	K21398		-	gmx:547711	857.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g3655	5	103779018	103782131	Mal5g3655	5	103779018	103782131	ECH
	Mal6g1366	6	24476258	24480033	Mal5g3655	5	103779018	103782131	PCT