Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3643 ATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAAGACGAATCCTTACAGAAACTCGTTGATCGATACGGTCCACGAAACTGGTCACTCATCAGCCGTGCTATTCCAGGCCGGAGTGGTAAATCCTGCAGGCTCAGATGGTGTAATCAGCTTTCTCCACAAGTTGAGCATCGGGCTTTTTCTCCTGAAGAAGATAATATCATTATCAGAGCCCATGCTCAGTTCGGTAACAAATGGGCTACAATAGCCCGATTGTTATCGGGCCGAACCGATAACGCTATCAAAAATCACTGGAACTCCACTCTCAAACGGAAGTGCTCGTCGTTCATTGGTTCCGATGATCGGGATTTCAATCCTCAGCCGTTGAAACGGTCTGCTAGCGTCGGTGCTCCGGGGAGTCCTTCTGGTTCTGATTTGAGCGATTCCGGTACACACGCCAACGTTTTTCGTCCTGTTCCGATTCGTTTGGCTGTGGAAACAACATCGGAACCGGAACCGGAGCCGGTGGAGGAGGATGATGGTCCGTTAACTTCTCTGTCGCTCTCTCTTCCAGGTGTGGATACTGCTGCGGCGGCGGTGCCGATTAGTCCGTCTCCGATGAGCGCTGTAACTGCTTCGGTGGCGGCGAAAGTGGCGAAAGTTTCGGAAGAAGCTGGAATTGGAGCGTTGAATTTGAGTGGTGAATTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTATATGGAAGAGAGAAATGGAATGTGTTTTCAAGGTGTGGATAGGCTTAGGAATGTTTCTGCTAAGCCAATTGGGATTAACAGGGTTGATGGGTGA 825 0.4958 MDRIKGPWSPEEDESLQKLVDRYGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFSPEEDNIIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFIGSDDRDFNPQPLKRSASVGAPGSPSGSDLSDSGTHANVFRPVPIRLAVETTSEPEPEPVEEDDGPLTSLSLSLPGVDTAAAAVPISPSPMSAVTASVAAKVAKVSEEAGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSAKPIGINRVDG* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3643 274 Gene3D - 4 56 - -
Mal5g3643 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Mal5g3643 274 PANTHER MYB TRANSCRIPTION FACTOR 2 247 - -
Mal5g3643 274 CDD SANT 7 49 IPR001005 -
Mal5g3643 274 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Mal5g3643 274 PANTHER MYB PROTEIN-RELATED 2 247 - -
Mal5g3643 274 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Mal5g3643 274 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Mal5g3643 274 SMART sant 56 104 IPR001005 -
Mal5g3643 274 SMART sant 4 53 IPR001005 -
Mal5g3643 274 CDD SANT 59 102 IPR001005 -
Mal5g3643 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Mal5g3643 274 MobiDBLite consensus disorder prediction 130 144 - -
Mal5g3643 274 MobiDBLite consensus disorder prediction 110 146 - -
Mal5g3643 274 Pfam Myb-like DNA-binding domain 8 65 - -
Mal5g3643 274 Gene3D - 58 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3643 Mal-Chr5 103400782 103401606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3643 1 245 MYB Transcription Factor Family AT4G37260 55.273 1.33e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g3643 Myb_DNA-bind_6 6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1356 6 24211405 24212361 Mal5g3643 5 103400782 103401606 ECH
Mal5g3643 5 103400782 103401606 Mal5g3643 5 103400782 103401606 ECH
Mal5g3643 5 103400782 103401606 Mal6g1356 6 24211405 24212361 PCT