Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3624 ATGTGGGATCTTAATGGTTCACCGTTTAAGAGAAAAGAAGATGAAAAATCTGAAGGAGATGATGATAAAGGTAAAAGGGTTGGTGGATCTGTTTCAAATTCAAGTTCTTCAGCTGTTGTAATAGAAGATTCAGAAGAAGAACAAGATGAAAACAACAGAACCATGATGATGAAGAAAAGAAACAGTAATAAGATATTTGGTTTTTCTGTAACTCAAGAAGATGAAGAAAATTCCTTAGACAGTGAAAATAATTTTCCTGTGACAAGACAATTTTTTCCTATGGATCAAGAACCTGATATGGTTGTAAATGGTGGAACATCTTCAACTACTTCTTCTAGTTTTCCTCGTGCTCATTGGGTAGGTGTGAAATTTTGTCAATCAGAAACACTTGGAGGTGGAAAATCATTAGAAGTTTCTTCTTCATCACAACCTATGAAGAAAAGTAGAAGAGGACCAAGGTCAAGAAGTTCACAATATAGAGGAGTTACTTTTTACAGAAGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTAGAGCATATGATAGAGCAGCTATTAAGTTTAGAGGAGTTGAGGCTGACATAAACTTTAACATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTGACAAAAGAAGAGTTTGTACATGTACTTCGCCGACAAAGCACTGGATTTCCAAGAGGAAGCTCTAAATATAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAAGCTAGAATGGGACAATTTTTAGGAAAAAAGTACGTTTATCTGGGATTGTTTGACACCGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGTAAAGAGGCCGTCACCAATTTTGATCCAAGCATCTATGATAGTGAGCTTAATAATTCTGCAGAACCAGCAAGTAATGCTGGTGATCATAATTTGGATTTAAGTTTAGGAAATTCAAGTTCAAAGCCCATCAATAATACTCAAGCATATGGGAGTCACAATTCAAATGTTGCAAATCATGCATCTGATCAATCAAATTGGCAAAATGGAGAAAACAAGCCTAAGCTTGTGAATATACTACCGAAACCTTATAATAGACCAAACAACATTGATGCATATGGAAGGGATTTGCATGGAGAGAGTGAAGCATTAAGGATGCTAAGTCAAACTCACCTTCATTCTTCATCATCTAATGAAATGCATAGATATGCTCCCTTTAGAGATCAATCACAAATGCTTCAAAGTTTTGCACATACTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCTATGGAAGCCGAGTTGGAAGTGAACTTTCATTATCAACAAGCAATCAACAACAACAATGGCAATCAGGACCACATTATTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAAATTAGACCACCCTCTTCTTCTCAAGCTTGGCAGCAAATAAATGGCTTCCACACTCTCATGAGACCCTCTTGA 1536 0.3757 MWDLNGSPFKRKEDEKSEGDDDKGKRVGGSVSNSSSSAVVIEDSEEEQDENNRTMMMKKRNSNKIFGFSVTQEDEENSLDSENNFPVTRQFFPMDQEPDMVVNGGTSSTTSSSFPRAHWVGVKFCQSETLGGGKSLEVSSSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNNSAEPASNAGDHNLDLSLGNSSSKPINNTQAYGSHNSNVANHASDQSNWQNGENKPKLVNILPKPYNRPNNIDAYGRDLHGESEALRMLSQTHLHSSSSNEMHRYAPFRDQSQMLQSFAHTHPPNFHFPSSSYGSRVGSELSLSTSNQQQQWQSGPHYLATAAAASSGFPPQIRPPSSSQAWQQINGFHTLMRPS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3624 511 MobiDBLite consensus disorder prediction 133 147 - -
Mal5g3624 511 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 509 - -
Mal5g3624 511 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Mal5g3624 511 MobiDBLite consensus disorder prediction 315 383 - -
Mal5g3624 511 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Mal5g3624 511 MobiDBLite consensus disorder prediction 315 371 - -
Mal5g3624 511 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 509 - -
Mal5g3624 511 CDD AP2 158 215 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Mal5g3624 511 MobiDBLite consensus disorder prediction 1 59 - -
Mal5g3624 511 MobiDBLite consensus disorder prediction 1 27 - -
Mal5g3624 511 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Mal5g3624 511 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Mal5g3624 511 MobiDBLite consensus disorder prediction 133 159 - -
Mal5g3624 511 MobiDBLite consensus disorder prediction 446 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3624 Mal-Chr5 102870836 102873624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3624 1 339 AP2-EREBP Transcription Factor Family AT4G36920 68.661 8.11e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mal5g3624 AP2 8.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3624 K09284 - gmx:100792442 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3624 5 102870836 102873624 Mal5g3624 5 102870836 102873624 ECH
Mal6g1338 6 23880328 23883387 Mal5g3624 5 102870836 102873624 PCT