Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3604 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATCCCATGGGATGTTGATACTGATGGATTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGGAACGGTCAACTGGGCGGTCTCGCGGTTTTGGATATGTGACATTTGCATCGGTGGATGATGCTAAGAATGTGCTATCCAGCGAACACAGTCTTGGCGACAGGACGCTGGAAGTCAAAGTTGCCACACCAAAGGAGGAGATGAGGGCACCAGTTAAAAAAGTTACCAGAATCTTTGTGGCCAGGATTGCACCATCTGTAACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATACGGTGAAATAACAGATTTATATATGCCAAAGGATCGTGGATCAAAAACACATCGGGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTGGAGAACTTGATGAAAGAAACCCATGAATTGGGGGGTTCTGATGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGACCCAGAACATCACAAGTAGGATATAGTGCATATAATGCTTATATTCCTGCATCAACTAGATATGCAGCACTTGGTGCTCCGACTATGTATGATCGTCCAAGTTCATTTTATGGAAGGGGAGAACCTGTTCGTGGGATTAGCAAAAAGATTTTTGTTGGTCGTCTTCCCCCGGATGCAACCACTGAAGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATATTAGATGTTTATATTCCTAGGGATGTCAAGAGATCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGATAGTGCTGTTGCAGATCGTGTCTCTCGAAGATCTCATGAGATTTGCGGACATGAGGTTGCCATAGATTCAGCAGCACCCCTTGATGAGGCAGGGCCCAGTGGGAATACTATGTTGAATAGCATGGATTCTTTCAGGGAATATGGCGGTCCTGTGAGACCTTATTTTGATCAAGGTCCTGTTAGGCCATATTTTGATCAAAGTCCTGTGAGGCCTTATGGGAGAATGTCCGATAGCCTGGACTTCGATGATTTGGGTTATGGAGTTGCTAGTAGAAGACAATCAAGAACAGATTGGAGGTATCGACCATACTAG 1140 0.4333 MEQRKLVVLGIPWDVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNVLSSEHSLGDRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGEITDLYMPKDRGSKTHRGIGFITFASADSVENLMKETHELGGSDVVVDRATPKEDDFKPIGRPRTSQVGYSAYNAYIPASTRYAALGAPTMYDRPSSFYGRGEPVRGISKKIFVGRLPPDATTEDLRLYFGRFGHILDVYIPRDVKRSGHRGFGFVTFADSAVADRVSRRSHEICGHEVAIDSAAPLDEAGPSGNTMLNSMDSFREYGGPVRPYFDQGPVRPYFDQSPVRPYGRMSDSLDFDDLGYGVASRRQSRTDWRYRPY* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3604 379 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 379 - -
Mal5g3604 379 SUPERFAMILY RNA-binding domain, RBD 88 185 IPR035979 GO:0003676
Mal5g3604 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mal5g3604 379 PANTHER OS01G0945800 PROTEIN 3 379 - -
Mal5g3604 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mal5g3604 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Mal5g3604 379 SMART rrm1_1 227 298 IPR000504 GO:0003723
Mal5g3604 379 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mal5g3604 379 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mal5g3604 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Mal5g3604 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 284 IPR000504 GO:0003723
Mal5g3604 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Mal5g3604 379 Gene3D - 87 174 IPR012677 -
Mal5g3604 379 Gene3D - 1 86 IPR012677 -
Mal5g3604 379 Gene3D - 224 306 IPR012677 -
Mal5g3604 379 SUPERFAMILY RNA-binding domain, RBD 225 323 IPR035979 GO:0003676
Mal5g3604 379 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3604 Mal-Chr5 102371420 102376922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3604 6 275 Eukaryotic Initiation Factors Gene Family AT2G36660 22.826 4.18e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3604 K14411 - gmx:100795240 599.356