Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3594 ATGTCAAAAATGGTGGCGGTTGATGAAAAGAAGAGGGATCGAATGGTTAAGAAAGATGTGATGGAGTTTCCACAAAATGATGATCATGGGAGAGAGGTGTATGAGGGTGTTCCTATGGCCAATTTCTCTAAAAAGTCTCCTTTAAATGATAAGCAAAACAAGGTGGTGGAGAAGAAATACAAGTTCTTGAATAGTCCAGCAAGACAAGTAACAACAGATGAGACACAATCACATAAGTTTGCAAGCTCAAGTAAAGGGGCAGCAGATGGTACATATTCTCGTGGCGAGGCCATATCATCTGCTGTGATTCAAGCCGAAGGACTCCGATCATATTTGGAACCAGAATTCCCAAGTTTCGTGAAGTCTTTGGTCAGATCACATGTAGCTAGTTGTTTTTGGATGGGGCTACCTGCGACGTTCTGTAAAAGACACTTACCAGATAAGGATACAACTATCACTTTGGAAGATGAATCTGGTAGAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCCGCTGTTCATAAATTGCTAGAAGGTGATGTGGTGGTATTCCAATTAGTTGAACCTACCAAATTTTTGGTTTATATAATAAGAGCGGAACTAGAGAATCAAGAGAGTTTCACCAAACAAAAAATGGGAGGCAGAAATAACATAGATATTGATGTTGTAGCATGTAATAGCCCAAAAAGAAAGAATGGTAAACATGTTCCAGAAGAAATCCAAAAGAAAAAGAAAACCATTGTACCAAAAATGGAGACTAAGGCTAAACAGTATGCAGAACAATCTGAAATTGATAGTGATGAAGCTTTATCAGAAATTTTTGAGGGATTTAAAATGCCTGAATTCAAAGAGTTAAAAGGTTTTGAAAATTTCAGAATTGTAGTTGATGGAAGGCCAATCGACGAGGAACTCTCTTCCGAAATTCGAAACAAGTACTACAAACTATGTTACAGTCAACAAGCTTTTCTTCATGACAGTCTCATCAAAGGCTTGCATTGTAAACTAATTGTTGGAATTATATCTGAAATTGTTAATATTGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGCGTTGAGTTTTCTAATTGGGATAAAACATTGCTAGCTTTTGAGCATTTGGGCATGAATGTTGAATTTTTAAGAGTTCGGTTGCGCAGGCTTGTTAGCATAGCTTTTGAAACTAACGATGCCTCGGAGATTAGAAGATATTTGGCCTATAGAACCGAACAACGCAGTCGGGTAGAGGATGAAATAAAGAACATGGAAATGAAACTTGAAGAATTGAAGGAAGCTTGTAGTGGCTTTGGTAATTATCTTGAGAGTTTGAAGTCTAAAGCTGAAAGGTATGAACATAAGTTTCAGAAAGAAGTTGCCGCTAATTGGTGA 1422 0.3769 MSKMVAVDEKKRDRMVKKDVMEFPQNDDHGREVYEGVPMANFSKKSPLNDKQNKVVEKKYKFLNSPARQVTTDETQSHKFASSSKGAADGTYSRGEAISSAVIQAEGLRSYLEPEFPSFVKSLVRSHVASCFWMGLPATFCKRHLPDKDTTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPTKFLVYIIRAELENQESFTKQKMGGRNNIDIDVVACNSPKRKNGKHVPEEIQKKKKTIVPKMETKAKQYAEQSEIDSDEALSEIFEGFKMPEFKELKGFENFRIVVDGRPIDEELSSEIRNKYYKLCYSQQAFLHDSLIKGLHCKLIVGIISEIVNIADAIKVSVISTPRVEFSNWDKTLLAFEHLGMNVEFLRVRLRRLVSIAFETNDASEIRRYLAYRTEQRSRVEDEIKNMEMKLEELKEACSGFGNYLESLKSKAERYEHKFQKEVAANW* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3594 473 Coils Coil 423 443 - -
Mal5g3594 473 Pfam B3 DNA binding domain 119 209 IPR003340 GO:0003677
Mal5g3594 473 Coils Coil 451 471 - -
Mal5g3594 473 MobiDBLite consensus disorder prediction 68 89 - -
Mal5g3594 473 CDD B3_DNA 117 208 IPR003340 GO:0003677
Mal5g3594 473 SUPERFAMILY DNA-binding pseudobarrel domain 112 209 IPR015300 -
Mal5g3594 473 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 409 IPR044837 -
Mal5g3594 473 MobiDBLite consensus disorder prediction 68 91 - -
Mal5g3594 473 ProSiteProfiles B3 DNA-binding domain profile. 119 210 IPR003340 GO:0003677
Mal5g3594 473 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 42 409 - -
Mal5g3594 473 SMART B3_2 119 210 IPR003340 GO:0003677
Mal5g3594 473 Gene3D - 100 211 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3594 Mal-Chr5 102244645 102247068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3594 92 208 B3 DNA Binding Superfamily AT3G19184 48.718 1.13e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal5g3594 B3 4.9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3594 - - gmx:100819237 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3594 5 102244645 102247068 Mal5g3594 5 102244645 102247068 ECH