Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3563 ATGGCAAGAGAGCTTATTCGTCCGTGTGCAGCATGCAAGCATCTTGGTCAGATGTGCGACTCAAGCTGTGACCTAGCTCCTTACTTTCCGGCGGACAACCCGCAGCGTTACAACCTCGTACACACTGTGTTTGGAAGGAGAAATGTCTCCAAAATATTGCAAGAAATAGATGTTTCGCATCGCGAACAAGCCGCTGATGCTTTGGTGTATGAGGCTGAGGCACGTGTGAGGGACCCTGTTTATGGTTGTGCTGGTCTTACCTCCATTCTTGAACAGAGGTTGAAGGAAGTTCAAGAGAATCTCAGGAATGTGAAGAATGAACTCACTAAGTACCTTAGTCCTGAGATCATTCAATTTGTTTTGTCCAATCCTGATCTTTTCGGCTTGGCGCCTGACAACTATCAAAATCCACATGTTTCTCAGTATCAGGCTCAGTCAAATGTTTCTCCACCGACTATGACAGTCGGTGGAGGACAATTGGCTATTAGTGAGCCTCAGCTGTCAACTGTTCAGTTGAAGGCTCTGCAGACTCACAACTTAGAACTACTAAAACAAAGGGCTCGTAGTGGCCCTAATGGTGGTGGGTTGACAATATTACTTCCTCCTGGTCATTTTCCTTTTCGTGATGTCGTGCTTCCTTCTTCTGGGCTTAATACTTTTGAAAATTGTAGCACTAGCATTACGTCCGACATGGGGTTCAACCCTATCAGTGGTGGTTTGGTTAGCTGTAGTGATGGTGGGTTGGCAGGGTTCCAGATGGGTGATGCTGATGTTCCTGCTGATGTTCCATTTCATGATCTCGTGTTTCCTTCTTCTGGGTTTGATACTTCTGACAATGGTAGCACTAGCTCTAGCAATTATCAGGACCAGGTTCAATTGCAAGGGGGACAACAACATCTTCCTACTGAGCCACAATTTGTGCGCGTGTCGCGGCGGAGATTGCAGTAA 948 0.4652 MARELIRPCAACKHLGQMCDSSCDLAPYFPADNPQRYNLVHTVFGRRNVSKILQEIDVSHREQAADALVYEAEARVRDPVYGCAGLTSILEQRLKEVQENLRNVKNELTKYLSPEIIQFVLSNPDLFGLAPDNYQNPHVSQYQAQSNVSPPTMTVGGGQLAISEPQLSTVQLKALQTHNLELLKQRARSGPNGGGLTILLPPGHFPFRDVVLPSSGLNTFENCSTSITSDMGFNPISGGLVSCSDGGLAGFQMGDADVPADVPFHDLVFPSSGFDTSDNGSTSSSNYQDQVQLQGGQQHLPTEPQFVRVSRRRLQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3563 315 Coils Coil 87 107 - -
Mal5g3563 315 MobiDBLite consensus disorder prediction 273 304 - -
Mal5g3563 315 MobiDBLite consensus disorder prediction 273 315 - -
Mal5g3563 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 7 166 - -
Mal5g3563 315 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mal5g3563 315 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mal5g3563 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3563 Mal-Chr5 101633662 101634609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3563 8 131 AS2 family AT5G66870 51.613 9.83e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g3563 LOB 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3563 - - mtr:MTR_8g079660 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g1316 7 42199735 42200721 Mal5g3563 5 101633662 101634609 PCT