Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3562 ATGGCAAGAGAGATTATTCGCCCCTGTGCAGCATGCAAGCATCAACATCGAAGGTGCGACATAAGCTGCGACCTAGCTCCTTACTTTCCGGCGGACAACCCGCAGCGTTACAACCTTGTACACACTGTGTTTGGAAGGAGAAATGTCTCCAAAATGCTGCAAGAAATAGACGTTTCGCATCGCGAACAAGCTGCTGATGCTTTGGTGTATGAGGCTGAGGCACGTTTGAGGGACCCTGTTCATGGCTGTCTTGGTCTTACATCCATTCTTGAAAATAGGTTGAAGGAAGTTCAAGAGAACCTCAAGAATGTGAAGAATGAACTCACTAAGTACCTTAGTCCTGAGATCATTCAATTTGTTCTGTCCAATCCTGATCTTTTCGGCTTAGTGCCTAACAACAATCAAGATCCACAAGGAAATCATGTTTCTGAGCAGCCGTCAACTCAGTTGACGGCTACTCAGCGGCATAATTTAGAACTACTGAAACAAATGGTTCGTAGGCCCGGCACCGGGTTGAACCCTGTTGGTGGTGGTGGGGAGGGACATCATTTTGGTTTTCATGTTCCTGTTGGTGCTCCTATTTCTGCTGTCATGGCTCCTTCTTTTGAAAATGGTGGCACTAGCACTAGTGGTAACCAGACCCAGTTGCAGTCATCGCAGGAACCGCCACATCAACAAGAATAG 684 0.4708 MAREIIRPCAACKHQHRRCDISCDLAPYFPADNPQRYNLVHTVFGRRNVSKMLQEIDVSHREQAADALVYEAEARLRDPVHGCLGLTSILENRLKEVQENLKNVKNELTKYLSPEIIQFVLSNPDLFGLVPNNNQDPQGNHVSEQPSTQLTATQRHNLELLKQMVRRPGTGLNPVGGGGEGHHFGFHVPVGAPISAVMAPSFENGGTSTSGNQTQLQSSQEPPHQQE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3562 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 154 - -
Mal5g3562 227 Coils Coil 87 107 - -
Mal5g3562 227 MobiDBLite consensus disorder prediction 201 227 - -
Mal5g3562 227 MobiDBLite consensus disorder prediction 198 227 - -
Mal5g3562 227 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mal5g3562 227 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mal5g3562 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 6 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3562 Mal-Chr5 101608411 101609094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3562 8 131 AS2 family AT5G66870 51.613 7.96e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g3562 LOB 3.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3562 - - mtr:MTR_8g079580 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3562 5 101608411 101609094 Mal7g1316 7 42199735 42200721 PCT