Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3549 ATGATCCAAGAACTCTTTGGTAACGGTGCTAGTGCTTCCCTCATAGCAAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGTTCCACTCCAACCAACACAATCTCCTTCTTCATGTCCCTCTTCTACCACCACCACGACAACCACCACCGTTTCTACACCAACCACCACCACCAACATCACTCCTTCATCAGAAAACCAACAACATCTGAGGTGTCCAAGATGCGACTCATCAAACACAAAGTTTTGTTACTACAACAACTACAACCTCACCCAGCCTCGCCATTTCTGCAAGACATGCCGTCGTTACTGGACAAAAGGTGGTGCTTTACGTAACGTACCCATCGGAGGTGGCTGCCGGAAAAACAAGAGCATAGGCGCCTCAAACACCGCCGCAAAAACTTCTACAAACAAGATGAAAACAGTTGCTTCCGAGTTCATCGGAAGGTCAGTAAGTGGTCAGGGGTTCGATCTGGAACACGTTGTTCCACCACCAAGTCAAATCCTCTGGGGTTCTCCTCAAAATTCTCATATACTTTCTTTGCTAAGATCTAGCCAAACCCAAAATCAAAACCCTAACCCTAACCATGTTAAGGAAGAAGATAATAACTTCATAGGGTCCCATGTTTCTCACATGATGAATTCTCAGCCGTTGATTTCGTCAAATGGTTATGATGGTGTTGGGCATGTTTTATGCAACCCATTTTGGAGAAACAATCATGATAATCAAACTCAACAAATACAAAATGGTGGATTATTTGTACTTGGGGAACAACAACAACAACATCAGCATCATCAAGAACTGTACCAGAAGCTAAGGTCATCAACATCATCATCAAGTAATAATTATTGTAGTGAAATTTCATCTTCACCAACAGTGTTACTAGGAAACGTGGCTACAAATTCTTCATCTATATCCAACATTTTGGAGACAACTTCAGTTGCTGGTGGTGAATTAGGGTACTGGAATCCAATTCCAACCCTTACTTGGTCTGATCTTCCAACTACAAATGGTGCATATCCATAA 1026 0.423 MIQELFGNGASASLIASERNYSSINGGVPLQPTQSPSSCPSSTTTTTTTTVSTPTTTTNITPSSENQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSIGASNTAAKTSTNKMKTVASEFIGRSVSGQGFDLEHVVPPPSQILWGSPQNSHILSLLRSSQTQNQNPNPNHVKEEDNNFIGSHVSHMMNSQPLISSNGYDGVGHVLCNPFWRNNHDNQTQQIQNGGLFVLGEQQQQHQHHQELYQKLRSSTSSSSNNYCSEISSSPTVLLGNVATNSSSISNILETTSVAGGELGYWNPIPTLTWSDLPTTNGAYP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3549 341 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 22 339 - -
Mal5g3549 341 MobiDBLite consensus disorder prediction 25 71 - -
Mal5g3549 341 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Mal5g3549 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 339 IPR045174 GO:0003700|GO:0006355
Mal5g3549 341 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Mal5g3549 341 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3549 Mal-Chr5 101329200 101330225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3549 55 173 C2C2-Dof Transcription Factor Family AT1G51700 52.713 5.49e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mal5g3549 zf-Dof 9.4e-33 No_clan