Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3513 ATGGAAGAACTTATTTGTGTTGAAAATCGTCAAGATGACATATTGAAACTTGATGACGAACTCATTGAACTGAGTGACGGTTCATTACTTATAATGGAAGATTCATCTAGTGAAGACCAAATGAATTCATCTAACTATCAAGAATTTGAAGAAATTATTGTGGATAAATTTCAAGGTGAAACATCACAAAACAGAAAAGAAGTAGAATTGTCATTTTCTAAATTGTTGGAGGTGGATGAGCCCGTGGCTGTGTGGTTCAAGTGGAGAGGGAAGTGGCATGCAGGCATCAAATGTGAAAGGGCTGATTGGCCATTGTCAATTGTGAAAGCCAAACCAGCTAATGATGAGCAGAACAAATATTTTGTCATTTATTCTCCAGAAACAAGGAATTATTCATGGGTTGATATGCTTCTCATTCAATCAATTGATGAGTTTCCTCAACCTATACCATATGAAACTCATCAAGAAGGATTGAAAATGGTTCAAGACTTGGCAATTGCGCGAGAATTTATAATGCAAAAGCTCGCCGTTGAAATGCTCTACATTGTTGATCAAATTCATCTTAATGCTTTGATAGAAGATGCTCGTAATGTGACGGTTTGGAAGCAGTTTGCTACGGAAGCTTCTCATTGTCGTCGTTATTCAGATCTTGGAAGAATGCTTCAGAGGCTGCAAAATAACATAATGCAACACTATATCAAAGCTGATTGGAAATTGCATTCCTCTGAATGTTGGGCTGAAAGATGTCAGAGTGCAAACACTGCTCAAATAGTAGAGCTGCTTCAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCCACGCACTTCGTGAAGCACCAGCACAACAAAAATTAGGTGATGAAGGGAAAACATGGAGCGATGATGTAATGAAATGGTTTTCCACACTTCCTTCCTATTCTGGTAGCAACAACACACAACAACATGCTTCTAGCTCTGATGGTTTGCACCAAGTAGGCCTTCAAGTTGGAAGCAAAAGGCCTAAACTTAAAGTTCGCCGCGCATATACACATTCTAGACATGAAGGTATTGTGGAGGTACCTATGGAAACCGAGCTTCCTAGTCAATTGATCAGTCCAGTAAGTGAAATTGCAGTCGATCCTGTAGATTCTGAGATCATGTTCAACAATGGAACAATATCAAGGCATGCAGATGAATTGGATATTCAAACATTTGTAGAACCTCGTACTAAGGATGGTATTGAGGATCGACAATGTCAAGCATATATTGAAGCCAAGGGAAGGCAATGTGTGAGAACGGCAATTGGTAATGATATATACTGTTGTGCACATTTCTCAAGAAAGAAAGAAAAACGTGTTAAAGTTCTCACTCCAACTTGTGGAGGTACAACTACTGCTGGTACTAAATGTAAGCATCATTCCCTTCCCAACTTTGCATTTTGCAAGAAACATCTATGCAATGGTGACACGAATAGGATCTCAAATTTAAACCTTCGTACGTTGAAGAGGAAAGCTGAAGAAAGTTGCAGTGGTTCAAAGAGCCAGGTTTGCAATGATTTGGTGTTGGTAAATCGGGAAATTCCATTGGAGATCGATCCAATGTCGGCCATTGATGATGATGATTCTTTCTCCGCAAAGAACATCTTAGGTGAAATCCTTATGCTTTCCGGCAATGATCACAATGAAATTGAGACTGCTAATAAGTGCAAGATCTGCTTTGAAGAATTTTTAAATGACCGAACACTTGGCGATCATTGGATGGAAAATCATAAAAAGGAAGCACAATGGTTGTTCAGAGGTTATGCTTGTGCCATTTGTTTTGATTCCTTCAGTAACAAAAAACTATTGGAATCACATGTTCAGAAGAGACACAGTGTGCCGTTTGTTGAACAATGCTTGCTTTTACTCTGTATTCCTTGTGGTAGTCATTTTGGGAATATGGATGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCCGAATTTAAGCTTTCAAAAGCTCCTGAGCAACTAAATTTGCCTATCAATGATGATTCTCCGAAAATGATTGAGCAGGGAAATGAAGATTCTTTGGACAATGATAATTCCAAGAATCCAAGTGATTCACGGAAGTTAAGTTGCAGGTTGTGTGGTTTGAAATTTAATTTACTTCCTGATCTCGGTCGCCATCACCAAGCTGCTCATATGGAGCGTAATCTTTCTCGCAGGCGTTTGGCGAAAAAGCGAGTTCGTTATTATACTCAAAGACTAAAATCAGGCAGACTTGGCCAACATGAGAGGGGGGAAACATCCATGCAGCAGTCTCATGTAAAGGAGACAACATGTACTGCTGAATTGGAAGAACCTCATTGTTTAGAAGCCGCTAGTATTTTGTCTTTTGATATTCACGAGACTCAACCCCGTCCAAACAATCTCGATATTCTATCACTCGCTTGCACTGCATCCTGCAAAGTTAATATTGAAGCCTCATTGAAGGAGAATGATGAGTCTCAACCCATCATCAATTCAAACCATATAAGATTAGGGTCATCACAAAAGGCTCTAGTGTTATGTGATGACATAAGCTTTGGGATCGAATCAACTCCAATCATTTGTTTTGTAGATCAACAGATTCTTAACTCTCTTTTTGAGCAAGAGCAACATATAAGAATTCCCAGACCTTGGGAGAGCTTTACATATGTGACAAAATCGATGATTGGTTGTTCACCTAGTCTTGCTTATGAGGGTTTGCAATTGAAATGTTATTGTTCATCTTCTACCTGTTGTCGTGAAACTTGCGATCACGTATATCTTTTTGATAATGATTATGATACTGCAAAAGACATATACGGGGAATCAATGTGCGGCAAGTTTCCATATGACAACGATGGTCGAATCATATTGGAGGAAGGTTATCTTGTATATGAATGCAATGATAATTGCAAATGTGATCAAACCTGTCCAAGCAGGATATTGCAAAATGGAATTCGTGTTAAGTTAGAAGTATTTAAAACTGAGAAAAAGGGATGGGGTGTAAGGGCTGGTGAGGCTATTTCGCGTGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGATGAGCAGGAGGCACACAACAGACGCGACAGATATGGAAAAGAAAATTGCAATTATTTCTACAATGTCGATGCTCGTGTCAATGATATGAGTCGATTAGTCGAAAGACATGCTCGATATGTCATTGACTCTACTAGATATGGAAATGTGTCCAGGTTCATCAACAACAGTTGTTCGCCCAATCTTGTGAATTACCAAGTTCTTGTAGAGAGCATGGATTGTAAACGTTCACATATCGGTTTTTATGCAAGTCGAGATATTGCTTTGGGCGAAGAATTAACTTATAATTATCACTATGAGCTTGTTGATGGAGAAGGATCACCTTGTCTTTGTGGATCTTCGAAGTGTCGGGGTCGCTTGTACTAG 3423 0.3915 MEELICVENRQDDILKLDDELIELSDGSLLIMEDSSSEDQMNSSNYQEFEEIIVDKFQGETSQNRKEVELSFSKLLEVDEPVAVWFKWRGKWHAGIKCERADWPLSIVKAKPANDEQNKYFVIYSPETRNYSWVDMLLIQSIDEFPQPIPYETHQEGLKMVQDLAIAREFIMQKLAVEMLYIVDQIHLNALIEDARNVTVWKQFATEASHCRRYSDLGRMLQRLQNNIMQHYIKADWKLHSSECWAERCQSANTAQIVELLQEELFDSILWNDVHALREAPAQQKLGDEGKTWSDDVMKWFSTLPSYSGSNNTQQHASSSDGLHQVGLQVGSKRPKLKVRRAYTHSRHEGIVEVPMETELPSQLISPVSEIAVDPVDSEIMFNNGTISRHADELDIQTFVEPRTKDGIEDRQCQAYIEAKGRQCVRTAIGNDIYCCAHFSRKKEKRVKVLTPTCGGTTTAGTKCKHHSLPNFAFCKKHLCNGDTNRISNLNLRTLKRKAEESCSGSKSQVCNDLVLVNREIPLEIDPMSAIDDDDSFSAKNILGEILMLSGNDHNEIETANKCKICFEEFLNDRTLGDHWMENHKKEAQWLFRGYACAICFDSFSNKKLLESHVQKRHSVPFVEQCLLLLCIPCGSHFGNMDELWLHVKSVHPAEFKLSKAPEQLNLPINDDSPKMIEQGNEDSLDNDNSKNPSDSRKLSCRLCGLKFNLLPDLGRHHQAAHMERNLSRRRLAKKRVRYYTQRLKSGRLGQHERGETSMQQSHVKETTCTAELEEPHCLEAASILSFDIHETQPRPNNLDILSLACTASCKVNIEASLKENDESQPIINSNHIRLGSSQKALVLCDDISFGIESTPIICFVDQQILNSLFEQEQHIRIPRPWESFTYVTKSMIGCSPSLAYEGLQLKCYCSSSTCCRETCDHVYLFDNDYDTAKDIYGESMCGKFPYDNDGRIILEEGYLVYECNDNCKCDQTCPSRILQNGIRVKLEVFKTEKKGWGVRAGEAISRGTFVCEYIGEVLDEQEAHNRRDRYGKENCNYFYNVDARVNDMSRLVERHARYVIDSTRYGNVSRFINNSCSPNLVNYQVLVESMDCKRSHIGFYASRDIALGEELTYNYHYELVDGEGSPCLCGSSKCRGRLY* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3513 1140 MobiDBLite consensus disorder prediction 676 695 - -
Mal5g3513 1140 ProSiteProfiles Zinc finger C2H2 type domain profile. 629 657 IPR013087 -
Mal5g3513 1140 SMART set_7 985 1123 IPR001214 GO:0005515
Mal5g3513 1140 ProSiteProfiles Post-SET domain profile. 1124 1140 IPR003616 -
Mal5g3513 1140 PANTHER SET DOMAIN PROTEIN 2 1140 - -
Mal5g3513 1140 ProSitePatterns Zinc finger C2H2 type domain signature. 701 722 IPR013087 -
Mal5g3513 1140 Pfam Zinc finger C2H2-type, 3 repeats 597 723 IPR040689 -
Mal5g3513 1140 ProSiteProfiles Pre-SET domain profile. 906 982 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3513 1140 SMART preset_2 845 969 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3513 1140 Gene3D SET domain 837 1140 IPR046341 -
Mal5g3513 1140 SMART c2h2final6 595 618 IPR013087 -
Mal5g3513 1140 SMART c2h2final6 699 722 IPR013087 -
Mal5g3513 1140 SMART c2h2final6 629 652 IPR013087 -
Mal5g3513 1140 SMART c2h2final6 561 584 IPR013087 -
Mal5g3513 1140 Pfam SET domain 996 1116 IPR001214 GO:0005515
Mal5g3513 1140 Pfam Pre-SET motif 849 977 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3513 1140 ProSiteProfiles SET domain profile. 985 1117 IPR001214 GO:0005515
Mal5g3513 1140 ProSitePatterns Zinc finger C2H2 type domain signature. 597 618 IPR013087 -
Mal5g3513 1140 ProSitePatterns Zinc finger C2H2 type domain signature. 563 584 IPR013087 -
Mal5g3513 1140 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 2 1140 - -
Mal5g3513 1140 SUPERFAMILY SET domain 836 1130 IPR046341 -
Mal5g3513 1140 MobiDBLite consensus disorder prediction 663 697 - -
Mal5g3513 1140 ProSitePatterns Zinc finger C2H2 type domain signature. 631 652 IPR013087 -
Mal5g3513 1140 Gene3D Classic Zinc Finger 549 621 - -
Mal5g3513 1140 ProSiteProfiles Zinc finger C2H2 type domain profile. 595 619 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3513 Mal-Chr5 100726257 100733253 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3513 521 819 C2H2 Transcription Factor Family AT2G23740 35.777 2.32e-51 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g3513 Pre-SET 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3513 - - mtr:MTR_8g078490 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3513 5 100726257 100733253 Mal5g3513 5 100726257 100733253 ECH