Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3510 ATGGTAATGCTTCCTGAAGGAGTAGCTTATGGACAAAATGAAGAACTGAATTGCGTCTTAAATTGCGAGTATGATATATCGGAATTTGATGATGAACTCAGTGACGGAACAGTATCAAGGCCTGTGGAACAGTATCAAGGTACTATAGATCGACAATGCCAAGCGTTTATAGAAGCCAAGGGAAGGCAGTGTTTGAAAGCGGCAATTGGTACCAATATATACTGTTCTGTTCATCTCTCAAATATAAAAGAAAAAATTGTTAAAGTTCTTACTCCAATTTGTGGAGGTACTACTATTACTGGTACAAGATGCAAGCATCATTCCCATCCCGGATTTTCTTTTTGTAAGAAACATTGGCACAGTGCCGAGACGGGCCAGACCTCAAATTCAAACTGCCATACATTAAAGAGGAAAGCTGAAGAAAGTTGCAGTGGTTCCATCCGGAAAGACTTGGTGTTGGTACATCCGGAAAGTCCATTGGAGATCGATCCAGTGTCGGTCATCAATGATAATGATTCTTTCTTTGCAAAGAACATCTTAGGCGAACCACTCATGCTTTCCGGTAATGATCAGTGGAAAGGCTCTCCTAACTATGGTAATGATCATAATAAAGACTCTTGTATTAATGATGAGAATGCTATTAATTGTAAGGTCTGCTTTGAAGAATTTCTCGATAACCAAACACTTGGCAACCATTGGATGGAAAATCATAAAAAGGAAGCACAGTTTTTATTCAGAAGTTATACTTGTGCAATTTGTTTTGATTCCTTCACTAACAAGAAGTTATTGGAATCACATGCTCAGAAGAGACATTGTATGCAGGATGGTGAACGCTGCTTGCTTTTTCTATGTATTCCTTGTGGTAGTTCTTTTGGAAATAAGGAGGAATTTTGGTTGCATGTTAAGTCAGTTCACCCTGCTGAATTTAAGCTTTCGAAAGCTCCTGCACAACTAACGTTGTCTACCAGTGATGATTCTCCAAAAATGATTGAGCAGGGAAATGAAGCTTCTTTGGACAATGATAATTCCGAGAATCCAGATGATTCACGGAAGTTAAGCTGCAGGTTTTGTGGTTTGAAATTTGATTCACTACCTGATCTCGGTCGCCATCATCAAGCTGCTCATATGGAGCGTGATCTAGCGAGCAGACGCTTGGCAAGGAGTGGCGTTCGTTATAATGCTTACAGACTAAAATCCGGAAGACTTAGCCGTCCAAAAATTAAAGGAGGTTTAGAAGAATCATCAAATATGATCAGGAGAAGGGATAAAGCTGATTTCAAGAGAAGAAAACAGGCGAAGAAGTTACTTGAGATGGGAGAAACATCCATCCAGCCTCATGTAAATGAGATAACAAGTATTGCTGAATTGGAAGAATCTCATTGCTTAGAGGCTGCAAATATTTGGTTTTCTTGTGAATCAGCATCAGGATGA 1431 0.3948 MVMLPEGVAYGQNEELNCVLNCEYDISEFDDELSDGTVSRPVEQYQGTIDRQCQAFIEAKGRQCLKAAIGTNIYCSVHLSNIKEKIVKVLTPICGGTTITGTRCKHHSHPGFSFCKKHWHSAETGQTSNSNCHTLKRKAEESCSGSIRKDLVLVHPESPLEIDPVSVINDNDSFFAKNILGEPLMLSGNDQWKGSPNYGNDHNKDSCINDENAINCKVCFEEFLDNQTLGNHWMENHKKEAQFLFRSYTCAICFDSFTNKKLLESHAQKRHCMQDGERCLLFLCIPCGSSFGNKEEFWLHVKSVHPAEFKLSKAPAQLTLSTSDDSPKMIEQGNEASLDNDNSENPDDSRKLSCRFCGLKFDSLPDLGRHHQAAHMERDLASRRLARSGVRYNAYRLKSGRLSRPKIKGGLEESSNMIRRRDKADFKRRKQAKKLLEMGETSIQPHVNEITSIAELEESHCLEAANIWFSCESASG* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3510 476 MobiDBLite consensus disorder prediction 320 340 - -
Mal5g3510 476 SMART c2h2final6 352 375 IPR013087 -
Mal5g3510 476 SMART c2h2final6 282 305 IPR013087 -
Mal5g3510 476 SMART c2h2final6 248 271 IPR013087 -
Mal5g3510 476 SMART c2h2final6 214 237 IPR013087 -
Mal5g3510 476 Gene3D Classic Zinc Finger 244 326 - -
Mal5g3510 476 MobiDBLite consensus disorder prediction 320 347 - -
Mal5g3510 476 PANTHER SET DOMAIN PROTEIN 34 470 - -
Mal5g3510 476 Pfam Zinc finger C2H2-type, 3 repeats 250 376 IPR040689 -
Mal5g3510 476 ProSitePatterns Zinc finger C2H2 type domain signature. 354 375 IPR013087 -
Mal5g3510 476 ProSitePatterns Zinc finger C2H2 type domain signature. 250 271 IPR013087 -
Mal5g3510 476 ProSitePatterns Zinc finger C2H2 type domain signature. 216 237 IPR013087 -
Mal5g3510 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 310 IPR013087 -
Mal5g3510 476 ProSitePatterns Zinc finger C2H2 type domain signature. 284 305 IPR013087 -
Mal5g3510 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 276 IPR013087 -
Mal5g3510 476 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 34 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3510 Mal-Chr5 100701615 100703045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3510 242 470 C2H2 Transcription Factor Family AT2G23740 42.060 8.22e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g3510 zf-C2H2_3rep 9.2e-53 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3510 - - mtr:MTR_8g078700 618.616