Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3509 ATGTACACCTTTTTTGATGATGATTATGATAATGTACAAGGCATATTCGGGAAACCAATGCACAGCAGGTTCGCATACGATGTAAATGGTCGAATCATATTGGAGGAAGGTAATATCGTGTTCGAGTGTAACGATAAGTGCAGATGCAATAGAACCTGTTCAAACCGAATATTGCAGAATGAAATTCACGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGAGTAGTAAGTGCTGGTAAAGCTATTTTGCGAGGCACGTTCGTGTGCGAGTACATTGGAGAGGTTTTAGAAGACCAGGAGGCACACAACAAATGCGGAAGACATGGCAAAGAAAATTGCAGTATTTTCTTTAACATTGACGCTCGTGTTAACCATATCAGTAGATTGGTTGAAGGACAGGATCGATATGTCATTGATTCTACTAGATATGGAAATGTGTCTAGGTTCATCAATAACAGCTGTTCACCCAATCTCGTGGATTACAAAGTTCTTGTAGAGGGCAAGGATTGTAAGCGTTCACATATCGGTCTTTACGCAAGTCGAGATATTGCTTTGGGTGAATAA 573 0.3979 MYTFFDDDYDNVQGIFGKPMHSRFAYDVNGRIILEEGNIVFECNDKCRCNRTCSNRILQNEIHVKLEVFKTEKKGWGVVSAGKAILRGTFVCEYIGEVLEDQEAHNKCGRHGKENCSIFFNIDARVNHISRLVEGQDRYVIDSTRYGNVSRFINNSCSPNLVDYKVLVEGKDCKRSHIGLYASRDIALGE* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3509 190 Pfam SET domain 75 190 IPR001214 GO:0005515
Mal5g3509 190 Gene3D SET domain 8 190 IPR046341 -
Mal5g3509 190 SUPERFAMILY SET domain 18 190 IPR046341 -
Mal5g3509 190 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 4 190 - -
Mal5g3509 190 Pfam Pre-SET motif 22 56 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3509 190 ProSiteProfiles SET domain profile. 64 190 IPR001214 GO:0005515
Mal5g3509 190 PANTHER SET DOMAIN PROTEIN 4 190 - -
Mal5g3509 190 SMART set_7 64 190 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3509 Mal-Chr5 100699521 100700935 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3509 4 190 C2H2 Transcription Factor Family AT2G23740 56.684 3.47e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal5g3509 SET 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3509 - - mtr:MTR_4g132610 293.893