Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal5g3505 | ATGGGTTGGCTTACCAAGTTTCTAAAGGGTTCCAACAATAGATATTCAGGACGAGGATACACCGGGAAATATGGACACGATAGAGATTCGGATAATCTTGATAATTCAGCGGATGATTTGAATGATATTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTCTCTCTTTCAGAGGTTTTAGAGGAAGATCATAAAGGGAAAAAAGTTATCGAAGAAGACTCTGAATCTGAAGATGATGAATTGTGTCCACTTGATGACGAGGAAGATGAGCACCATCTTGATGATGCTGAACAAGATGAAGATGACCATGTTGCTAAAATTCAACAGGATGAAGACAAAAATCTCGATGAAGTTCAACTAGAGGAAGATGAAGAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCACCTCCTCCATCTCACACTGATTCTATATTTCAACCTTTTACAAACCTCTTTTCACCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGGTTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGCTTCTGTTGCCATGCTTGCAAACTTCCAATCACTGATTACGAGTATTCCATGTCTGGAAATCGTCCTTATCATAAATCATGCTACAAGGAACTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGCCTTATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCACACGAGCGCGACGGCACCCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGATACAAAGTATCTGTTGCTTGATGACGGTCGAAAGCTGTGTCTTGAGTGTCTCGATTCAGCTATTATGGATACTCATGAATGTCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAAAGACAAGCACTGAATGAAGCCATGGAGGGCGAAAAGAATGGTCATAATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAAACTATCCCCACTATTTTAAGGAGACCAAGTATAGGAGCAGGCTACCGTGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGCTACGGCAATCTGAGGCCTGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCGGCTCCGGAAGTGAAGAAGCATCATCATCTTCGTCTTCATCTTCATCGTCTTCATCATCACCTTCCTCTACGTCTTCAAAGAAGGGTAAACGATCTGATTTTGAGAAGGAACTTGGTAAATTTTTTAAACACCAGATTGAGTCAGATAGTTCACCAGCCTATGGAGATGGGTTCAGAGAGGGTAACCAGGCAGTGCTCAAGTACGGGCTTAGACGAACCCTTGACCATATCCGAATGACCGGAAGTTTTCCATAA | 1599 | 0.4203 | MGWLTKFLKGSNNRYSGRGYTGKYGHDRDSDNLDNSADDLNDIEREEIDRAIALSLSEVLEEDHKGKKVIEEDSESEDDELCPLDDEEDEHHLDDAEQDEDDHVAKIQQDEDKNLDEVQLEEDEELARAIQESLSIGSPPPSHTDSIFQPFTNLFSPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKSCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHNHHLPETRGLCLSEEQTIPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSSSSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIESDSSPAYGDGFREGNQAVLKYGLRRTLDHIRMTGSFP* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal5g3505 | 532 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Mal5g3505 | 532 | ProSitePatterns | LIM zinc-binding domain signature. | 162 | 196 | IPR001781 | - | |
| Mal5g3505 | 532 | Coils | Coil | 93 | 113 | - | - | |
| Mal5g3505 | 532 | MobiDBLite | consensus disorder prediction | 61 | 85 | - | - | |
| Mal5g3505 | 532 | SMART | uim | 43 | 62 | IPR003903 | - | |
| Mal5g3505 | 532 | SMART | uim | 121 | 140 | IPR003903 | - | |
| Mal5g3505 | 532 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 157 | 187 | - | - | |
| Mal5g3505 | 532 | MobiDBLite | consensus disorder prediction | 21 | 40 | - | - | |
| Mal5g3505 | 532 | MobiDBLite | consensus disorder prediction | 452 | 475 | - | - | |
| Mal5g3505 | 532 | CDD | LIM_DA1 | 162 | 214 | - | - | |
| Mal5g3505 | 532 | PANTHER | TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED | 1 | 532 | - | - | |
| Mal5g3505 | 532 | Pfam | Protein DA1 | 311 | 528 | IPR022087 | - | |
| Mal5g3505 | 532 | Pfam | LIM domain | 162 | 216 | IPR001781 | - | |
| Mal5g3505 | 532 | ProSiteProfiles | LIM domain profile. | 160 | 220 | IPR001781 | - | |
| Mal5g3505 | 532 | MobiDBLite | consensus disorder prediction | 452 | 480 | - | - | |
| Mal5g3505 | 532 | PANTHER | PROTEIN DA1-RELATED 2 | 1 | 532 | IPR045218 | - | |
| Mal5g3505 | 532 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 121 | 140 | IPR003903 | - | |
| Mal5g3505 | 532 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 189 | 244 | - | - | |
| Mal5g3505 | 532 | SMART | lim_4 | 161 | 213 | IPR001781 | - | |
| Mal5g3505 | 532 | Gene3D | Cysteine Rich Protein | 156 | 220 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal5g3505 | Mal-Chr5 | 100551155 | 100554459 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Mal5g3505 | DA1-like | 5.3e-104 | CL0126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal5g3505 | - | - | gmx:100806605 | 855.514 |
Event-related genes