Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3502 ATGGCTTCTTCCTTCATTCTATCTCACACTCTATTTCATGCACTCATGTTCTTTTCTGCCATCCATGTCCTACATCATTTGCCACTAACCAATGGAAGAAACTTCTCATGCCCTTTGAATTCACCTCCTCCCTGTGACACATATGTTGCATACTTTGCTAACTCTCCAAACTTTTTAACCCTCACAGCCATATCTGATATATTTGACACCAGTCCTCAATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCAAGGCCAACTTTTGCTGATACCTATAACTTGTGGTTGCAGTGGAAATGGAAACTACTCTTTTACCAATATCTCACACTTGATCAAAGAAGGTGAAAGTTACTATTATCTTTCAACCATTTCATATCAGAATCTCACTAATTGGCAGACAGTGGAAGATTTAAACCCAAATCTGAATCCATATTTGTTAAAAATAGGCACCAAAATAGCCATCCCTTTGTTCTGCAGTTGCCCTTCAAACTATTTTGCAAAAGGGATAAAGTACCTCATTACTTATGTTTGGCAGCCTAATGACAACCTTACCCTTGTAGCTTCCAAGTTTGGTGCATCACCAAAGGACATAATCACAGCAAATACAAACAACTTTGGTCAAAACTTCACTGCTGCAACCAACCTTCCGGTTTTTATCCCAGTAAAAAACTTACCAGTTCTTTCTCAATCATACTATTCTTCGAGTGAAAAAAAGAGAAACAATCATTTTCCTATAATCTTTTCCATTGCGTTGAGTCTCGGATGTGCTCTTCTGATTTCACTAACATTACTGGCTTCTGTGTATTTTTTGAGGAAAAGAAAAGCTTGTGAGAATAAGTGTGTGCCTTCTGTGGAGATAGCAGATAAGTTAATTTCTGAAGTTTCAAACTATGTAAGTAAGGCAAAAGTGTATGAAGTTGGTATGATTATGAAAGCTACAATGAACCTCAATGAAATGTGTAAGATAGGGAAATCAGTGTACAAAGCTAAAATAGATGGTTTGGTTTTAGCTGTGAAAAATATTAAGGAAGATATCACAGTCACAGAAGAATTGATGATTCTACAAAAGGTAAATCATGCAAATCTAGTGAAACTAATTGGTGTCTCTTCAGGATATGATGGAAATCACTTTCTTGTATATGAATATGCTGAAAATGGATCTCTTTATAACTGGCTGTTCTCTGAACTTTCCACTCTTAGTTGGAGTCAAAGGTTAAGCATAGCAATTGATGTTGCAATAGGTCTTCAATACATGCATGAACACACAGAACCAAGTATAGTCCATAGAAACATAACATCAAGTAACATCCTTCTTGACTCAAACTTTAAGGCCAAGATATCAAATTTTTCTGTTGCAAGAACCACAAAGAATCCTAAGATTACAAAAGTAGATGTTTTTGCTTATGGGGTGGTTCTGTTGGAGTTAATAACAGGAAACAAGTTTTTGCCGTATAGCGAAAAAGGTGAGGTGAATATGTTGTGGAAAGATATTAAAGGAGTGTTTGATATTGAAGAGAAGAGAGAGGAAAGTGTTAGAAGATGGATGGATCCTAAGTTGGGGAGGTTTTACAATCTTGTTGAAGCTCTTAGTTTGTTCACTTTGGCAATGAATTGCATAGAAGAACAACCTTTGTTAAGACCAACTATGGGAGAAATTGTTCTTAGCCTTTCTCTTCTCACTCAACATTCTCCTACTTTGTTAGAGAGGTCTTGGACTTATGGATTAGATTTAGAGGTTGCTGGAATGGTTACTCCCGTCATAGCTCGTTGA 1788 0.3652 MASSFILSHTLFHALMFFSAIHVLHHLPLTNGRNFSCPLNSPPPCDTYVAYFANSPNFLTLTAISDIFDTSPQSIARASNIKDENMNLIQGQLLLIPITCGCSGNGNYSFTNISHLIKEGESYYYLSTISYQNLTNWQTVEDLNPNLNPYLLKIGTKIAIPLFCSCPSNYFAKGIKYLITYVWQPNDNLTLVASKFGASPKDIITANTNNFGQNFTAATNLPVFIPVKNLPVLSQSYYSSSEKKRNNHFPIIFSIALSLGCALLISLTLLASVYFLRKRKACENKCVPSVEIADKLISEVSNYVSKAKVYEVGMIMKATMNLNEMCKIGKSVYKAKIDGLVLAVKNIKEDITVTEELMILQKVNHANLVKLIGVSSGYDGNHFLVYEYAENGSLYNWLFSELSTLSWSQRLSIAIDVAIGLQYMHEHTEPSIVHRNITSSNILLDSNFKAKISNFSVARTTKNPKITKVDVFAYGVVLLELITGNKFLPYSEKGEVNMLWKDIKGVFDIEEKREESVRRWMDPKLGRFYNLVEALSLFTLAMNCIEEQPLLRPTMGEIVLSLSLLTQHSPTLLERSWTYGLDLEVAGMVTPVIAR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3502 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 21 595 - -
Mal5g3502 595 Gene3D Transferase(Phosphotransferase) domain 1 389 464 - -
Mal5g3502 595 Gene3D Transferase(Phosphotransferase) domain 1 465 575 - -
Mal5g3502 595 Pfam Protein tyrosine and serine/threonine kinase 340 463 IPR001245 GO:0004672|GO:0006468
Mal5g3502 595 ProSiteProfiles LysM domain profile. 179 223 IPR018392 -
Mal5g3502 595 CDD LysM 113 160 IPR018392 -
Mal5g3502 595 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 21 595 - -
Mal5g3502 595 Gene3D LysM domain 114 161 IPR036779 -
Mal5g3502 595 ProSiteProfiles Protein kinase domain profile. 290 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g3502 595 SMART LysM_2 180 224 IPR018392 -
Mal5g3502 595 SMART LysM_2 114 161 IPR018392 -
Mal5g3502 595 Gene3D Phosphorylase Kinase; domain 1 294 388 - -
Mal5g3502 595 SUPERFAMILY Protein kinase-like (PK-like) 306 574 IPR011009 -
Mal5g3502 595 Pfam LysM domain 60 97 IPR018392 -
Mal5g3502 595 Pfam LysM domain 117 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3502 Mal-Chr5 100471932 100473719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3502 45 577 Receptor kinase-like Gene Family AT2G23770 29.032 4.15e-62 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mal5g3502 PK_Tyr_Ser-Thr 2.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3502 - - vra:106777834 660.988