Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3500 ATGGTCACATTTTTTACTACAAATGTTAGTTCTACCAAGCAATCTGAGATAGAAGGCATAGAAATGAATGTGATTGATCAATGTTGGAGATTCAATCCTGAATGGAGGAAACATCGACAACAACTTGCTATTTGCTCAGTGGGCTATGCGGGGAAAATGACAAACAACATTGGTAAAGATCTGATCCATTATAAAGTTACCGATCCTAGTGACCACCCTTTAAATCCAAGACCTGGAACCTTAAGATATGGAGCTTCTAAGATTCAAGGTAAAGTTTGGATCACATTCCAAAGGGATATGAACATTAAGCTTGTTGGGCCCCTTCTCATTAGTAGTTTCACCACCATTGACGGTCGAGGCGTCGATGTACACATTGCAGATAATGCGTGCTTGATGATATATAAGGCAACCAACATAATCATCCACGGAATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTCCTGATGGAAAGATAATGCAATTAGGTCAAGTTGATGGAGATGCAATAAGATTGGTTTCTGCTTCAAAAATTTGGATTGATCATAACACACTTTATGATTGTCAAGATGGTCTTCTAGACGTCACAAGAGGTTCCACTAATATAACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAAGTTATGCTTCTTGGTCATGACGATGGATTTTTGAGAGACAAAAACATGAAAGTCACCGTTGTATACAACTATTTTGGACCTAATTGCCACCAGCGTATGCCTAGAATTCGTCATGGATATGCACATGTTGCGAATAATTTGTACATGGGATGGGTGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCACCCACAGGGAAAAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATTGGAGATACGTGGGAATTTTACTCAGTTGGTGACGCTTTTGAAAATGGAGCATCCTTCATAGAAACAAAAGGTGGACAAGTGATAAAACCGAATTATAACCATGAACAAAACTTTGAAGTTGCTGATGCCAAATCTGTAAGATCATTGACAAGATCATCTGGTGTATTACAATGCAGTAAAACCTCAATATGTTGA 1122 0.3895 MVTFFTTNVSSTKQSEIEGIEMNVIDQCWRFNPEWRKHRQQLAICSVGYAGKMTNNIGKDLIHYKVTDPSDHPLNPRPGTLRYGASKIQGKVWITFQRDMNIKLVGPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIMQLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFLRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPPTGKKEVTWRKSSNGIGDTWEFYSVGDAFENGASFIETKGGQVIKPNYNHEQNFEVADAKSVRSLTRSSGVLQCSKTSIC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3500 373 Gene3D - 22 366 IPR012334 -
Mal5g3500 373 Pfam Pectate lyase 110 290 IPR002022 -
Mal5g3500 373 SUPERFAMILY Pectin lyase-like 17 366 IPR011050 -
Mal5g3500 373 SMART amb_all 99 296 IPR002022 -
Mal5g3500 373 PANTHER PECTATE LYASE 3 370 - -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 70 95 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Mal5g3500 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Mal5g3500 373 PANTHER PECTATE LYASE 18-RELATED 3 370 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3500 Mal-Chr5 100462127 100463885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3500 53 300 Polysaccharide Lyase AT5G09280 70.161 1.53e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3500 K01728 - gmx:100811216 664.84