Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3482 ATGGTTGATTTAGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCATCTCTTCTTCTGGTAACAACAATATTCATACTCCAATTCCAAAACCCACCAAGAAAAAAAGAAATCTCCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCAACAACGTTATTAGCTACAAACAGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGGGATCAGAATCTACAACTACATAGAAGAGGACATAATCTACCATGGAAACTGAGACAAAGATCAAGTAAAGAAGTTAGAAAAAGGGTTTATGTTTGTCCTGAACCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATCTAACAGGGATAAAAAAGCACTTTTGTAGAAAACACGGTGAGAAAAAGTGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACTGTTTTTTCCAGGAGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCGTTGGCAGAGGAAAATGCAAAATCTCAGACTCAAACTGTTGGGAAAGCTAATTCAGAATCTGATTCGAAGGTTTTGACCGGCGATTCATTGCCGGGGCCGATGCCGGTGGTGGCTACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTGCCAGAAAATCCGCCACAAATCATAGAGGAGCCACAAGCTGTTGCTACTACTACTACTGCTACTGCTTTAAATGTGAGTTGTAGCAACAGCAGTACTAGCTCGACAAGTAATGGCTGTGCCGCTACCAGCAGTGGTGTGTTTGCAAGCTTGTTCGCTTCATCAACAGCTTCAGCTTCTGCGAGTCTTCAACCTCAGACACCGGCGTTCAGTGACCTAATTAGGTCCATGGGATGTGCAGATCCTCGTCCTACAGATTTCTCAGCTCCTCCATCGTCTGAGGCGATATCTCTCTGCCTCTCCACCAATCATGGATCATCAATTTTTGGAACGGGAGGACAGGAGTGTCACCTATACACGCCGGCACATCAGCCGCCCGCGATGTCTGCTACTGCATTACTTCAGAAAGCAGCTCAAATGGGCACTGCTTCCACAAACGCCTCTTTGCTTCGTGGGCTTGGAATTGTGTCGTCTTCTGCTTCCACTTCATCAGGTCAACAAGATAGCTTGCATTGGGGTCTCAGACAAATGGAACCGGAGGGTTCTGGTTTAGTTTCGGCAGGACTTGGACTAGGTCTTCCCTGTGACAGCGATTCTGGACTAAAGGAATTGATGTTGGGGACTCCGTCAATGTTTGGTCCTAAGCAGACAACTCTTGATTTTCTAGGATTAGGAATGGCTGCTGGTGGTAGTGCCGGTGGAGGCTTGTCAGCACTTATCACATCAATTGGCGGCGGCAGTGGTTTGGATGTTACCGCAGCAGCCGCGTCCTTTGGTAACGGAGAGTTCTCTGGCAAAGATATTGGACGGAGCTCATGA 1554 0.453 MVDLDNVSTASGEASISSSGNNNIHTPIPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQTQTVGKANSESDSKVLTGDSLPGPMPVVATTPQSNSGVSSALETQKLDLPENPPQIIEEPQAVATTTTATALNVSCSNSSTSSTSNGCAATSSGVFASLFASSTASASASLQPQTPAFSDLIRSMGCADPRPTDFSAPPSSEAISLCLSTNHGSSIFGTGGQECHLYTPAHQPPAMSATALLQKAAQMGTASTNASLLRGLGIVSSSASTSSGQQDSLHWGLRQMEPEGSGLVSAGLGLGLPCDSDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3482 517 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Mal5g3482 517 Gene3D Classic Zinc Finger 116 197 - -
Mal5g3482 517 MobiDBLite consensus disorder prediction 196 238 - -
Mal5g3482 517 MobiDBLite consensus disorder prediction 196 213 - -
Mal5g3482 517 MobiDBLite consensus disorder prediction 1 45 - -
Mal5g3482 517 MobiDBLite consensus disorder prediction 224 238 - -
Mal5g3482 517 Gene3D Classic Zinc Finger 42 108 - -
Mal5g3482 517 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 2 516 - -
Mal5g3482 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 516 - -
Mal5g3482 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Mal5g3482 517 SMART c2h2final6 103 133 IPR013087 -
Mal5g3482 517 SMART c2h2final6 138 158 IPR013087 -
Mal5g3482 517 SMART c2h2final6 62 84 IPR013087 -
Mal5g3482 517 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Mal5g3482 517 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Mal5g3482 517 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3482 Mal-Chr5 100183072 100185421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3482 2 517 IDZ Gene Family AT5G66730 57.818 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g3482 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3482 K25869 - gmx:100806404 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3482 5 100183072 100185421 Mal5g3482 5 100183072 100185421 ECH