Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3468 ATGTTTGTGAGGTCTGGAAACATGTCATTGAAAAGCATAGTAAGCGAACTCAAGGGGATGAAAAATGGAATAGGTAGCATATCGAGCAAGCATTGGCTCTGTCGGTCAAAGTCACACACTGCTCCGGAAGTAACTCCAATTGAACATATTCAACAGGGACAATGGGCAAGTCTACCACCTGAATTGCTTTTGGACATAATTCGTAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGTGCCGTTGTTGTCTTTTGTGCTTCAGTGTGTAAATCATGGAGGTCCATCACGAAAGAGATTGTCAAGAGTCCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCGATGAAGTGCTTTATTTGGAGGAACAAAAGAACTTCTACATTCCTGTTGTACTTCGGCGTGGTACCATTGGAGTATAAGAGTCATAAATTCTTATTAGCTGCTAAAAGGATAAGAAAGGCCGAATGCATCATATCCTTAGCTGCAGACGATTTTTCTCAATCCAGCAAAAATTATGTTGGTAAAGTAAGGTCCAATTTTTGGGGCAGCAAGTTCTCTATATACGACAGTCAACCACCAGTTAATGTTGCAGTTCAACCAAATTGTCGACCAAGCGGGATATTGAATTCTAAGCAAGGGTCACCAAAAAGAGTTCCAGCATGTAGCCATCTTGTTAGCACCATTTTCTATGAGGCGCGCACTAAAATGCTACGAAATATTGACTGCATCATGAACTCGATACCTGTCTCAGCTCTTCAGGAAGGGGGAAACACCCCGACTCCAACATCGTTACCTCAAATATTTGATTCTCGTTCACCAGCACTGAAAGAAAAAAGTCCAATGACAGATTCATACAATGCAAGCCTATCAGAGATACCAGAACTGAGCCAAAGCTCTGTCGAGCCCTTGACACTCATAAATATGTCTCCCACATATTATGATGACGAGATCCATTGTTGGGGCCGAGGCTCCATGGGCTATGCTAGAGTGAATATGGCATCGGTAAAGAACTTTCAACTTGTAGCCGCTGTTCATCCATCTCATAATGTTTCGCGGGCGGAGCTAAAAAGGGTAATCTTATGGCTTGGAAAGTTTGAAAAAGATATATTCATCATGGAATACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCATAACGTCAATGATCTGA 1212 0.429 MFVRSGNMSLKSIVSELKGMKNGIGSISSKHWLCRSKSHTAPEVTPIEHIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSITKEIVKSPQQCGRITFPISLKQPGPRDYPMKCFIWRNKRTSTFLLYFGVVPLEYKSHKFLLAAKRIRKAECIISLAADDFSQSSKNYVGKVRSNFWGSKFSIYDSQPPVNVAVQPNCRPSGILNSKQGSPKRVPACSHLVSTIFYEARTKMLRNIDCIMNSIPVSALQEGGNTPTPTSLPQIFDSRSPALKEKSPMTDSYNASLSEIPELSQSSVEPLTLINMSPTYYDDEIHCWGRGSMGYARVNMASVKNFQLVAAVHPSHNVSRAELKRVILWLGKFEKDIFIMEYSYPLSAFQAFAICITSMI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3468 403 Pfam F-box domain 55 101 IPR001810 GO:0005515
Mal5g3468 403 PANTHER TUBBY-RELATED 8 402 - -
Mal5g3468 403 MobiDBLite consensus disorder prediction 265 291 - -
Mal5g3468 403 MobiDBLite consensus disorder prediction 265 280 - -
Mal5g3468 403 Pfam Tub family 116 402 IPR000007 -
Mal5g3468 403 Gene3D Tubby Protein; Chain A 115 402 IPR025659 -
Mal5g3468 403 PRINTS Tubby superfamily signature 387 403 IPR000007 -
Mal5g3468 403 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Mal5g3468 403 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Mal5g3468 403 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Mal5g3468 403 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Mal5g3468 403 PANTHER TUBBY-LIKE F-BOX PROTEIN 8 402 - -
Mal5g3468 403 SUPERFAMILY Tubby C-terminal domain-like 104 402 IPR025659 -
Mal5g3468 403 Gene3D - 48 103 - -
Mal5g3468 403 SUPERFAMILY F-box domain 51 98 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3468 Mal-Chr5 99762530 99764325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3468 8 402 TUB Transcription Factor Family AT2G18280 51.843 2.90e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal5g3468 Tub 1.4e-61 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3468 K19600 - gmx:100777506 503.827