Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3467 ATGTCATTGAAAAGCATAGTCCGCAAACTCAAGGGGATTAAAAATGGAATATCAAAGCGGGGTGGTGAGAGCAAGCATTGGCTTTGTTGCCGATCAAAGTCACACGTTCCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAATGGGCAAGTCTACCACCCGAATTGCTTTTGGACATAATTCGTAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGTGCTGCTGTTGTCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCGTCACGAAAGAGATTATCAAGACTCCTCAGCAATGTGGAAAGATCACATTTCCTATTTCATTGATGCAGCCCGGTCCCCGTGATCATCCGATAGGATGCTATATCAGAAGGAACAAAAGAACTTCTACATTCTTGTTGTATTTCAATTCGGTGCAATCGGAGAATAAGAGTTATAAGCTGTTATTAGCTGCCAAAAGGACAAGAAGGTCCAACTTTGTCATATCCTTGGCTGCAGACGATTTTTCTCGAGCAAGCAACAAATATGTTGGTAAAGTGAGGTCAAATTTTTGGGGCACCAAGTTCACTATATACGAGAGTCATGAAACTTTTTTTCCTTCACCAGCACTGAAGAGAAAACGTCCAATGAAAGATTCATACTCTGCAAGCCTATCAAAGAAACCAGTACTGAGCCGAGGCCCAGTCAAGACCTTTATTCTAAAAAACAAGGCTCTGAGAACGGATGAGCAGCGCAATGGTTGGTGCCCTAATTCCATGACGCGTGCTAAAGTAATATCTGTGAAAAACCTTGCTCTTGTAGCCGAAGTTTATGGATCTCAAAAATGGCCACTCGTGCAGTTACTAAAGGCTGGTAGAAAAGATATATTCACCATGTACTACACTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACTTCAAATGTGATGTGA 948 0.4283 MSLKSIVRKLKGIKNGISKRGGESKHWLCCRSKSHVPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAAVVFCASVCKSWRSVTKEIIKTPQQCGKITFPISLMQPGPRDHPIGCYIRRNKRTSTFLLYFNSVQSENKSYKLLLAAKRTRRSNFVISLAADDFSRASNKYVGKVRSNFWGTKFTIYESHETFFPSPALKRKRPMKDSYSASLSKKPVLSRGPVKTFILKNKALRTDEQRNGWCPNSMTRAKVISVKNLALVAEVYGSQKWPLVQLLKAGRKDIFTMYYTYPLSAFQAFAICLTSNVM* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3467 315 Pfam Tub family 223 312 IPR000007 -
Mal5g3467 315 Pfam Tub family 111 198 IPR000007 -
Mal5g3467 315 Gene3D - 43 98 - -
Mal5g3467 315 Gene3D Tubby Protein; Chain A 108 232 IPR025659 -
Mal5g3467 315 SUPERFAMILY F-box domain 45 94 IPR036047 GO:0005515
Mal5g3467 315 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Mal5g3467 315 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Mal5g3467 315 SUPERFAMILY Tubby C-terminal domain-like 99 312 IPR025659 -
Mal5g3467 315 Pfam F-box domain 50 95 IPR001810 GO:0005515
Mal5g3467 315 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 218 312 - -
Mal5g3467 315 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 1 199 - -
Mal5g3467 315 PANTHER TUBBY-RELATED 218 312 - -
Mal5g3467 315 PANTHER TUBBY-RELATED 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3467 Mal-Chr5 99758338 99759736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3467 234 312 TUB Transcription Factor Family AT2G18280 52.326 8.97e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal5g3467 Tub 1.4e-18 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3467 K19600 - mtr:MTR_8g077640 420.239