Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3465 ATGTCATTGAAAAGCATAGTCCGTGATCTCAAGGGGATGAAAAATGGAATAGGTAGCATTTCAAAGCAGGGTGTAGAGAGCAAGCATTGGCTCTATCGGTCAAATTCTCACCTTGCTCTCGATGTAACTCCAATTGAACCTATTCAACGGGGACAATGGGAAAGTCTACCACCTGCATTGCTTTTGGACATAATTCGTAGGGTTGAAGAGAGTGAGACATCTTGGCATGCGCGTGCCGTTGTTGTCTTTTGTGCTTCGGTATGCAAATCATGGAGGTCTGTAACTTTAGAGATCGTCAAGACTCCGCAGCAATGTGGAAGGCTTACATTTCCTATTTCATTGAAGCAGCCCGGTCCCCGTGATTATCCGATACAGTGCTTTATTAGGAGGAACAAAAGAACCTCTACATTCCAGTTGTACTTAGGTTTGGTGCCATCGGAGAATGAGAGTAATAAGTTGTTATTAGCCGCCAAAAGGACAAGAAGGTCCGACTTTGTCATATCCTTGGCAGCAGACGATTTTTCTCAAGCCAGCAACAAATATGTTGGTAAAGTGAGGTCTAATTTTTGGGGCACTGATTTCACTATATACGACAGTCAACCTCCACATGATGCTGCAGTTCGATCAAATTGTAGCCATCTTGTTAGCACCATTTGTTATGAGATTTTCACTAGAAAGCCAACAAGAATGCATTGCATCATGAACTTTAACATCGTTACCACTATTCAAGAAGGGAGAAATGCCCCGTCTCGAATATTGTTACCTCAAATATTTGATGAACCTTTTTCTCCTTCACCAACACCGAAGGGAAAAAGTTCAACGACAATTTCATACTCTGCAAGCCCATCAAAGCTACCAGGACTGAACCAAGGCTTGCGCTCTGTAAAGAACTTTCAACTAATAGAATATGTTGATCCATCCCATAATGTTTCTCCTGTAGAGCCAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACCATGGACTACTCTTACCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACATCAATGAGACTAGATAAAATTAACATTGCCAACGTACCGATTAAAATATCAAAGCCTACCGTGAATCCAAATAATATATGTTGA 1131 0.4138 MSLKSIVRDLKGMKNGIGSISKQGVESKHWLYRSNSHLALDVTPIEPIQRGQWESLPPALLLDIIRRVEESETSWHARAVVVFCASVCKSWRSVTLEIVKTPQQCGRLTFPISLKQPGPRDYPIQCFIRRNKRTSTFQLYLGLVPSENESNKLLLAAKRTRRSDFVISLAADDFSQASNKYVGKVRSNFWGTDFTIYDSQPPHDAAVRSNCSHLVSTICYEIFTRKPTRMHCIMNFNIVTTIQEGRNAPSRILLPQIFDEPFSPSPTPKGKSSTTISYSASPSKLPGLNQGLRSVKNFQLIEYVDPSHNVSPVEPEKVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSMRLDKINIANVPIKISKPTVNPNNIC* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3465 376 Pfam F-box domain 53 98 IPR001810 GO:0005515
Mal5g3465 376 PANTHER TUBBY-LIKE F-BOX PROTEIN 210 279 - -
Mal5g3465 376 Gene3D Tubby Protein; Chain A 111 355 IPR025659 -
Mal5g3465 376 Pfam Tub family 293 351 IPR000007 -
Mal5g3465 376 Pfam Tub family 114 235 IPR000007 -
Mal5g3465 376 PRINTS Tubby superfamily signature 286 302 IPR000007 -
Mal5g3465 376 PRINTS Tubby superfamily signature 336 358 IPR000007 -
Mal5g3465 376 PRINTS Tubby superfamily signature 315 334 IPR000007 -
Mal5g3465 376 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Mal5g3465 376 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Mal5g3465 376 SUPERFAMILY Tubby C-terminal domain-like 102 351 IPR025659 -
Mal5g3465 376 PANTHER TUBBY-LIKE F-BOX PROTEIN 293 351 - -
Mal5g3465 376 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 206 - -
Mal5g3465 376 PANTHER TUBBY-RELATED 293 351 - -
Mal5g3465 376 PANTHER TUBBY-RELATED 210 279 - -
Mal5g3465 376 PANTHER TUBBY-RELATED 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3465 Mal-Chr5 99740887 99743255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3465 1 351 TUB Transcription Factor Family AT2G18280 51.000 2.36e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal5g3465 Tub 5.8e-31 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3465 K19600 - gmx:100805380 462.996