Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3451 ATGTTACTTACTCTCTCTCTCTCTCCTACTCCTCCTATAAATTCAAACCATTCTATGCAACATATTATTCCCACTCACAAAACAGTGCTAAACTCATTCTCCTTTCAATCTATAACACCAACCATATCAATGATGCATCATTGTTGCAGTAGCTCTCAACAGAGTCACATAATGGGAGGAGGATGCACATGTGGTATGTTTCATCCTCAAACCAATTCTAACTACTCCATGTTTTACTCTCAGCATGAAAACTACGAATACGATGGTTACTCCTACAATCCATCTTCTTCTGTTGATTGCACACTTTCCCTTGCTACACCTTCCACACGTTTAACTGAAGATCAAGAGAAACGTTCTCGTCTCTCTTCGCTTTTTTCATGGAACAAATCTTCAAACACTAAACATAATTCTCAATCTCAAACCAAGTCAAACAGAGGTAACAATATTGGTAATAACTCCAACAATGATTCTCTTCTTGCTCGTCGATGTGCGAGCTGTGACACCACTTCTACTCCCCTTTGGAGGAATGGTCCTCGTGGCCCTAAGTCACTATGCAATGCTTGTGGGATTAGATACAAGAAAGAAGAGAGAAGAGCAAATGCCGCCGTTGCAACGTCAACAACGCCCAACGGCGGCATAATGGAGTCAGGGAACTTCTACAGCAACAACAACAACAATTCATGGTACTCACAACCACAGAGTCAAATGTATGGCAATGAGCTACGTTTCATGGATGATTCAGATGCAGAATCAGAAAATGGCATTCCAAATTTCCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 822 0.4088 MLLTLSLSPTPPINSNHSMQHIIPTHKTVLNSFSFQSITPTISMMHHCCSSSQQSHIMGGGCTCGMFHPQTNSNYSMFYSQHENYEYDGYSYNPSSSVDCTLSLATPSTRLTEDQEKRSRLSSLFSWNKSSNTKHNSQSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAVATSTTPNGGIMESGNFYSNNNNNSWYSQPQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3451 273 PANTHER GATA TRANSCRIPTION FACTOR 18 44 270 IPR044272 GO:0003700|GO:0009908
Mal5g3451 273 Gene3D - 159 212 IPR013088 GO:0006355|GO:0008270
Mal5g3451 273 PANTHER GATA TRANSCRIPTION FACTOR 18 44 270 - -
Mal5g3451 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 204 - -
Mal5g3451 273 ProSitePatterns GATA-type zinc finger domain. 163 188 IPR000679 GO:0006355|GO:0043565
Mal5g3451 273 SMART GATA_3 157 209 IPR000679 GO:0006355|GO:0043565
Mal5g3451 273 MobiDBLite consensus disorder prediction 124 154 - -
Mal5g3451 273 Pfam GATA zinc finger 163 197 IPR000679 GO:0006355|GO:0043565
Mal5g3451 273 ProSiteProfiles GATA-type zinc finger domain profile. 157 193 IPR000679 GO:0006355|GO:0043565
Mal5g3451 273 CDD ZnF_GATA 162 194 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3451 Mal-Chr5 99530205 99531176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3451 63 273 C2C2-Gata Transcription Factor Family AT3G50870 41.844 8.77e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal5g3451 GATA 2.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3451 - - ccaj:109801476 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3451 5 99530205 99531176 Mal5g3451 5 99530205 99531176 ECH
Mal6g1136 6 17372695 17374174 Mal5g3451 5 99530205 99531176 PCT
Mal5g3451 5 99530205 99531176 Mal6g0954 6 14332498 14340421 PCT