Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3434 ATGGGAACTGATAGTTGTGAAGTGGTAGAGACATTACCAGATCCCCAGTCTTTTAAGGTACATCGTAGAATGTGCACAGAACTCAAGAAATTTGTGGATAGAGTGTTAAGCATATGTCCGCAAATAGAGGAAGCACGCCCTCGATCCTCATCAGGAATACCGGCTCTGGTTTTGCTAACCAGTACGGTAGATAAAGCCAAACAACTTCTGCAACATTGTTCTGATTCTAGCAAACTCTACCTGGCAATAACAGGGGAGTCAATTCTCTCAAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAAGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAATTGATGATCTTAGGTGCGTGACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGGAGGGTTATGAGAGAATTGCTCCAACAAGGTCCTTCAACCGCAGATAACGATTCTAAGGAAAAGTCAGACGTAAAATCTCTTCAATTTGCAGCGGCAAGACTTAATATCACATCCGCAACAAGCATCGTAATAGAGAAAAGATCTATTAAGAAGTTACTACAAAAACTTGGACCAGAAGAGGAAACGAAAAAGGTGATCTTGAAAAATCTGTTTTATCTTCTGATGAAGTATGGAAACTTATTAAACACGGGAGAACAAGAGGAGGTCTATTCTCATCGTGAAGAACCGGTGGCAAATGAGAACTCCAGTCATGATTCTTTACGCACCGATCATGTCAATTCTGGGCCGTATTCGAACCATGATCAGTGTGGAACTTGTGCCAGCGATTTGAGTAGAGTTGCACCCCCTGAGGAATATGCGTGCCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACGTACGAACTGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCAAAAACTAAAAAGAAACTGCCGCATTTGGCGATGACTCCTAACGTTGCTTTAAAGGAATTAATATCAAAGTGGTGCAAAACTAATGGAGTCTCCATTCCTAATCCAAGTAGACAAGTGGAAGACATTCGCTCATGGGAAGCTTCAGTCACTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATATTAGTAACGTGTCATTTGGATCATTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCATGGCTTAAATTCAATGTTGATCAAGACTAGAAACGGTTCTCGCGGGCATCAGTCTCGTTCACAGATACATGGCACATATATGGTGCCCTTGTCTGAACTTCATGAGCGTCAATGGGATTCACAGTGCCAAATCGTCAAAGATATGAAAATAGATTTCAAATGCAATTACCAAGCTTTTAACTCTATGTCATCGGAGAATTTCATAGACCCACTTATGAGATTTCTGAGCACTGCATGTGATAAGCATGACACAAAAGCTCTGCGAGGTGGATGTCAATTACTGTTGGAATTTACTAAGTGCTGCAGAAGTTTGAACAAGAAAAGAATGAGTTTAGAAATGGCAGCGGAATCATCAGAAGGTGAAGAAGAAGGAAAGCTAAGCGGCGGAAACCAAGTCTTGATTATAGATGACGACCTCCGTGAATTAGGTAAAAAGGCCGCCTGGAGTGTCAGCTCCTGCAAAACTGGCAACGGCGTTTCTTCTCTTCGTGACGACAATCTCGAAACCTACTGGCAATCTGATGGAGCTCAACCTCATTTTGTTAATATTCAATTCCAGAAGAAAGTGAGATTACAATTAGTTGTGCTCTACGTGGATTTTAAGCTTGATGAGAGTTATACGCCGAGTAAGATTTCCATTCGCGCAGGAGATGGTTTTCACAACCTCAAGGAGATAAAAGCTGTGGAACTTGTGAAACCAACTGGTTGGCTTTATCTATCATTATCTGGACTTGATCCTCGTGAAACTTTTGTCAACACTTTTATGTTGCAAATTGCCGTGTTATCAAACCATCTCAATGGAAGGGATACACATGTGCGGCAGATCAAAGTTTATGGGCCTAGACCGAACCCCATTCCACAGCAGCCATTTCAATTTACTTCAAGAGAGTTCATCACCTACTCTACTATAAGATAA 2139 0.4123 MGTDSCEVVETLPDPQSFKVHRRMCTELKKFVDRVLSICPQIEEARPRSSSGIPALVLLTSTVDKAKQLLQHCSDSSKLYLAITGESILSKCQKARKSLEKSLVQIQDIVPVMLAAEISRIIDDLRCVTFVLDSAEEEAGRVMRELLQQGPSTADNDSKEKSDVKSLQFAAARLNITSATSIVIEKRSIKKLLQKLGPEEETKKVILKNLFYLLMKYGNLLNTGEQEEVYSHREEPVANENSSHDSLRTDHVNSGPYSNHDQCGTCASDLSRVAPPEEYACPISLRLMYDPVVIASGETYELMWIQKWFDEGNVICPKTKKKLPHLAMTPNVALKELISKWCKTNGVSIPNPSRQVEDIRSWEASVTSIRSFGSSMNGLNLPMDISNVSFGSLDNSYNSDSSLVKASHGLNSMLIKTRNGSRGHQSRSQIHGTYMVPLSELHERQWDSQCQIVKDMKIDFKCNYQAFNSMSSENFIDPLMRFLSTACDKHDTKALRGGCQLLLEFTKCCRSLNKKRMSLEMAAESSEGEEEGKLSGGNQVLIIDDDLRELGKKAAWSVSSCKTGNGVSSLRDDNLETYWQSDGAQPHFVNIQFQKKVRLQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKAVELVKPTGWLYLSLSGLDPRETFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPQQPFQFTSREFITYSTIR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3434 712 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Mal5g3434 712 Pfam Anaphase-promoting complex, subunit 10 (APC10) 541 709 IPR004939 -
Mal5g3434 712 CDD APC10 548 687 IPR016901 GO:0005680|GO:0031145
Mal5g3434 712 SUPERFAMILY RING/U-box 270 351 - -
Mal5g3434 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Mal5g3434 712 CDD RING-Ubox_PUB 281 321 IPR045210 -
Mal5g3434 712 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Mal5g3434 712 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 511 - -
Mal5g3434 712 PANTHER U BOX DOMAIN-CONTAINING 2 511 - -
Mal5g3434 712 SMART APC10_2 547 711 IPR004939 -
Mal5g3434 712 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Mal5g3434 712 ProSiteProfiles DOC domain profile. 526 712 IPR004939 -
Mal5g3434 712 SUPERFAMILY Galactose-binding domain-like 541 688 IPR008979 -
Mal5g3434 712 Gene3D - 506 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3434 Mal-Chr5 99157810 99166868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3434 15 505 U-box Gene Family AT4G36550 37.097 7.64e-92 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3434 - - gmx:100798951 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3434 5 99157810 99166868 Mal5g3434 5 99157810 99166868 ECH
Mal6g1126 6 17135075 17138828 Mal5g3434 5 99157810 99166868 ECH
Mal6g1126 6 17135075 17138828 Mal5g3434 5 99157810 99166868 PCT