Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3433 ATGTCATTCAAAAGCATAGTCCGCGAACTCAAGGGGATGAAAAATGGAATAGGTAGCATATCAAAGCGGGGTTCCGAGACCACGAATTGGCTCTGTCGATCAAAGTCACATGTTGCTCCGGATGTAACTCCAACTGAACCTATTCAACAGGGACAGTGGGCGAATCTACCTCCTGAGTTGCTTTTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGTGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTAACTAAAGAGATCATCAAGACTCCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCCCGTGATTATCCGATCCAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACCTTTGTATTGTACTTAGGTTTGGTGCCATCGGAACATGAGAGTAATAAGTTGTTATTAGCCGCCAGAAAGATAAGAAGGGCCACAGGCACCGACTTCGTCATATCCTTGGGTACAGACGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGTACCAAGTTCGCCATATATGACAATCAACCTCCACATGACACTGCAGTTCAACCAAATCGTCGACCAAGTGTGAGACTTAATTCTAAGCAGTTGTCACCAAGAGTTCCAGCATGTAACAATCTTGTTGGCACCATTTCCTATGAGATGAATGCTCTTTGGACTAGAGGGCCAAGAAGAGTGCACTGCATCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGAGGAAACGCCCCAACTCCAACATCGTTACCTCAAATATTCGGTGTACCTTTTTCTCCCTCGCCATCACTGAAAGAAAAGAGCCCAATGACAGATTTGTATTCTGGCTGCCTATCAGAGCTACCAGAACCGAGCCAAGGCTCGATGGAGTCCTTGGTACTCAAAAACAAGTCTCCTAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTGGCATCTGTAAAGAACTTTCAACTTGTAGCTTCTGTTGATCCGTCTCATAATGTTTCTCCTGCGGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGACTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATATGCTTGACAAGCTTTGATACTAAACCAGCCTGTGAATGA 1239 0.4487 MSFKSIVRELKGMKNGIGSISKRGSETTNWLCRSKSHVAPDVTPTEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPSEHESNKLLLAARKIRRATGTDFVISLGTDDFSRASNKYVGKLRSNFWGTKFAIYDNQPPHDTAVQPNRRPSVRLNSKQLSPRVPACNNLVGTISYEMNALWTRGPRRVHCIMNSIPISAIQEGGNAPTPTSLPQIFGVPFSPSPSLKEKSPMTDLYSGCLSELPEPSQGSMESLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3433 412 Gene3D - 46 101 - -
Mal5g3433 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Mal5g3433 412 Pfam F-box domain 53 98 IPR001810 GO:0005515
Mal5g3433 412 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Mal5g3433 412 Pfam Tub family 114 407 IPR000007 -
Mal5g3433 412 PANTHER TUBBY-RELATED 1 412 - -
Mal5g3433 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Mal5g3433 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Mal5g3433 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Mal5g3433 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Mal5g3433 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3433 Mal-Chr5 99153201 99154887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3433 1 412 TUB Transcription Factor Family AT2G18280 62.500 2.99e-178 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal5g3433 Tub 3.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3433 K19600 - gmx:100805380 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3433 5 99153201 99154887 Mal5g3433 5 99153201 99154887 ECH
Mal6g1125 6 17131132 17133481 Mal5g3433 5 99153201 99154887 ECH
Mal6g1125 6 17131132 17133481 Mal5g3433 5 99153201 99154887 PCT