Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3364 ATGGAGTGTGTGAAAGCAGAAGAAGCTTTGAAAAAAAGTTTTAACATAAGCACATCCGTGAAACCCAGTCCACAAACATTGTTAGAGGACTTATCTTCTTTTAATGTCCAAGACATAGCTTCTATTGATGATTTCTTTGTCGATGATTTCCTTAACTTTTCCAACGAAGAACAAGACCAAGAACAAGAACAAGACTTTGTTGAAGAAAAACAACAACCTCAACAACAAAACCAAAACGTAATTTCTAACCCCATAATCAACCACCAATTTGCTTCATTATCCACTACAGAACTCACTGTTCCGGTAGAAGAAGCTGCTGATTTAGAATGGTTATCATATTTCGTTGAAGATTCCTTCTCAGAATTTCCCAAAACAGAAAATGTCCAACTTCAACAAAAAGCTCATGAACCAAAACCCACATTTTCTACACCATGTTTCAAAACTCCGGTACCGGCAAAAGCAACAAGCAAGAGAACAAGAACCGGAGTTCGTGTATGGCCAGTTTCACTAGCCAATTCATCTTCAACCTCAAGCTCAACTACCCTTTCTTCCTCAAACCTGGAGGAATGTTCAAAGCCTCCGGAGAAAAAAGCGAAGAAGATGGTTTCACCGGAGGGTGAAGCAAGAGGTGTGCCGCGGCGGTGTAGTCATTGTGGTGTTCAGAAGACTCCTCAGTGGCGAACTGGACCGTCTGGGCCGAAAAGGCTTTGTAATGCTTGTGGGGTTCGGTTTAAATCGGGTCGGTTGTTACCGGAATACCGACCTGCTTGTAGTCCTACTTTTTCAAGTGAGTTGCATTCTAATCATCACCGGAAAGTTATTGAGATGCGGCGGAAGAAGGAGGTTGTTCCTGGTTTTTTATTATAA 867 0.4175 MECVKAEEALKKSFNISTSVKPSPQTLLEDLSSFNVQDIASIDDFFVDDFLNFSNEEQDQEQEQDFVEEKQQPQQQNQNVISNPIINHQFASLSTTELTVPVEEAADLEWLSYFVEDSFSEFPKTENVQLQQKAHEPKPTFSTPCFKTPVPAKATSKRTRTGVRVWPVSLANSSSTSSSTTLSSSNLEECSKPPEKKAKKMVSPEGEARGVPRRCSHCGVQKTPQWRTGPSGPKRLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKEVVPGFLL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3364 288 PIRSF Txn_fac_GATA_plant 1 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mal5g3364 288 MobiDBLite consensus disorder prediction 171 189 - -
Mal5g3364 288 MobiDBLite consensus disorder prediction 57 76 - -
Mal5g3364 288 Pfam GATA zinc finger 215 249 IPR000679 GO:0006355|GO:0043565
Mal5g3364 288 SMART GATA_3 209 263 IPR000679 GO:0006355|GO:0043565
Mal5g3364 288 PANTHER GATA TRANSCRIPTION FACTOR 1 282 - -
Mal5g3364 288 Gene3D - 206 282 IPR013088 GO:0006355|GO:0008270
Mal5g3364 288 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
Mal5g3364 288 CDD ZnF_GATA 214 262 IPR000679 GO:0006355|GO:0043565
Mal5g3364 288 MobiDBLite consensus disorder prediction 171 212 - -
Mal5g3364 288 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Mal5g3364 288 MobiDBLite consensus disorder prediction 135 159 - -
Mal5g3364 288 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 271 - -
Mal5g3364 288 PANTHER GATA TRANSCRIPTION FACTOR 1 282 - -
Mal5g3364 288 MobiDBLite consensus disorder prediction 190 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3364 Mal-Chr5 97477558 97478859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3364 7 281 C2C2-Gata Transcription Factor Family AT5G66320 44.444 1.02e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal5g3364 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3364 - - cam:101512459 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g1070 6 16210749 16212165 Mal5g3364 5 97477558 97478859 ECH
Mal5g3364 5 97477558 97478859 Mal5g3364 5 97477558 97478859 ECH
Mal6g1070 6 16210749 16212165 Mal5g3364 5 97477558 97478859 PCT