Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3350 ATGAGAACTCGAAATGCCGATTCTTCTTCCAAATCTACAACCCCTAAAAAGACACCGCCGGCGAGAAAATCCGCCGGAGAATCTCCCGCCCCAAAGCGCACTCCTCCGTCGAAAACCAGAAACGCTAAGAAGACGGAAGTATCGCCCGTAACCGATCCGGATCAGTCTCAGAAGCAGAAATCAGTAGACAGTGCTACAACTACGAAGAGGAATACACCGGGGAAACCGAGAACAAAAGTGGTTGCCGTCACTCCAAATTTGGAAGAGCAATTGGAGGCAGAAGCTGATGATACTACAGTTGTAGATAATTATGAGACAGTAGAGAAAATGGAAGAAGTTGGAAATGTTAAAGACATTGATGTAGATAATATCGAGAGTGAAAAAGAGGGAGAACGGAGTTTTGTTTCTGTTGGATTATCTGATGGGAGGGAACATAAGCCCATGGAAGTGGATGAACCTGTTGTTGAAAAAGTTTGTGAACCTGTTGTCGAAAAAATGGATGAACCTCTTTCTTTTAAACGACCAGGTTGCACCATTGTCGACCTCAATATATCTGTGGCCGATAATGAAGATTGTACTGGTGCAAAAGAGGGAGGGGAAGAGTTGAAAGAGGAAGAGTTGAATGTACAGGAGGGAGATAGAGGAAAGGGAGAGTTGAACGCACATGAAGGAGAAAAAGGAACAGACGGGTTGAAAGAACAAGGAAAGAAAGGAAAAGATGAGTTGAACCAACATAAAAGAAAGAAAGAAATGGAAGAGTTTGAAATACACGGAGGAGAAAAAGGAAAGGAAGAGTTGAAAAATCAGGAAGGAGAGAAAAAAATGGAGGAGTTTAAAATTCAGGAAGGAGAAAAAGGAAAGGAAGAGCTGAAAGAACAGGAAGGCGAGAAAGGAGCAGAAGAGTTGAAGGAACATAAAAGAGAGAAGGGAAAGGAAGTGTTAAAAGAACCAGTAGGAGAGAAAGAAAAAGAAGAGTTGAAAGAAAATGAAGGAGAGGAAGGAAAGGAAGAGTTTAAAGAAGAGGAGATAGAAAACACAAAAGGAGAGGAAACAAACAGTATTGGACATGAAGAGCATTCTAGTGTAGAAGTACAAGCCCAGCTGCAAAAAGATGTTGATCCCAAAAGTTATGGTGTTGAAGGGACAAAGAGTGGTGAATTGATAGATCTTGGAGAACAAGAGAGGGTGCAGCTTGAGGAGGAAGATCCGGAGGAGGATCCAGAGGAAGACCCAGAAGAAGATCCTCAGGAACCACCCGAAGAAACTGAGACATTGGATGAAGAGCATATGGAATTTGAAGCCATTGCAGAGCAACGACAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGATACTACAGACGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGGTAGAGGAAGTCAGGTTGTATAAAAATTCTTCAACAAATAAAAATAAGGGCCATGCTTTGGTGAGGTTTGCTAGTAAGGAGCATGCAAAGAAAACTTTGTCTGAAATGAAGAACCCTGTTATACGTGGAAAACGATGTGGCACCTCACCTAGTGGGGATAATGACACATTATTCTTGGGAAATATTTGTAATACATGGACAAAAGAAGCTGTTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAGCATGAAGGCTTGAGCCAGGGCTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTTGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCCTTTGCTGAACCGATACATGAACCAGACCCAGAGATAATGGCACAAGTGAAGTCTGTGTTTATTAATGATCTACCTCTTCACTGGGATGAAGATCATGTGAGGGAGCGCCTTAAATCTTACGGTGAAATTGTAAGAATTGTTTTGGCGAAGAAAATGCCCACAGCTAAGAGGAAAGATTATGGATTTGTGAATTTTTCTACACATGAAGCTGCTTTAGCTTGTGTTGACGGTTTAAATAAATCAGAATTGGTAGATGGGACATCGAAGATAAAAGTGAGAGCTAGGCTTTCAAACCCTTTGCCCAAAATGCAGGCTGTCAAGGATGGCATGTGTGGTGGCCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAATAGGGGCAGGAGTTTCTATCATCATGGGGGGCGCAGTCAAGTCGGAAGAATGGGTTTTTGGGACGACCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGGACCCATAAGGGGTGGACATTATGCAGGTAGTCGAGGTGGTGCTCCATTTGCTGGTCCATCTAGACACTATCATGATAGAGCATGGTATGGTATCCCCGATGGAGGCCCCGGTGAGCCATTTCCTCCAAGAAGGCCCTACGCTGCAGGTGGACAGTTTTGTGGTATCCCTGATGGAAGCCCTGGTGGGCCTATTCCTCCAAGAAGGCCGTACTCTCCAGGCGGACAGTTTTATGGTATCCCTGATGGAGGCTTTGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATTCCTGATGGAGGCCCTGGTGAGCCTATTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATTTCTATATGATGACAATATTCGTGGAATCAAACGCCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGATTTCGCCCCCGATTTGATTCTGCAGATCCATCTATATTTCACGGAACTCGATATCATGATTATGCCGGTGCTGGCAGAGGACAGTACCCGCCGGACTATAATGGTTCTGATCATGGTGGAGGTCCATATCCATCTTTCTATGGGGGCGATGGCCCACATGGACACAGATACTATTATTAG 3051 0.4451 MRTRNADSSSKSTTPKKTPPARKSAGESPAPKRTPPSKTRNAKKTEVSPVTDPDQSQKQKSVDSATTTKRNTPGKPRTKVVAVTPNLEEQLEAEADDTTVVDNYETVEKMEEVGNVKDIDVDNIESEKEGERSFVSVGLSDGREHKPMEVDEPVVEKVCEPVVEKMDEPLSFKRPGCTIVDLNISVADNEDCTGAKEGGEELKEEELNVQEGDRGKGELNAHEGEKGTDGLKEQGKKGKDELNQHKRKKEMEEFEIHGGEKGKEELKNQEGEKKMEEFKIQEGEKGKEELKEQEGEKGAEELKEHKREKGKEVLKEPVGEKEKEELKENEGEEGKEEFKEEEIENTKGEETNSIGHEEHSSVEVQAQLQKDVDPKSYGVEGTKSGELIDLGEQERVQLEEEDPEEDPEEDPEEDPQEPPEETETLDEEHMEFEAIAEQRQIRKEHEIFVGGLDRDTTDEDLRKVFQRIGEVEEVRLYKNSSTNKNKGHALVRFASKEHAKKTLSEMKNPVIRGKRCGTSPSGDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHEGLSQGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSVFINDLPLHWDEDHVRERLKSYGEIVRIVLAKKMPTAKRKDYGFVNFSTHEAALACVDGLNKSELVDGTSKIKVRARLSNPLPKMQAVKDGMCGGLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFNRGRSFYHHGGRSQVGRMGFWDDPDFSMHPDFHQWQFGPQGPIRGGHYAGSRGGAPFAGPSRHYHDRAWYGIPDGGPGEPFPPRRPYAAGGQFCGIPDGSPGGPIPPRRPYSPGGQFYGIPDGGFGEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFDMPFMGRHVDDPFLYDDNIRGIKRPFYMTDPEPDYMGPNRFRPRFDSADPSIFHGTRYHDYAGAGRGQYPPDYNGSDHGGGPYPSFYGGDGPHGHRYYY* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3350 1016 CDD RRM_SF 625 699 - -
Mal5g3350 1016 Gene3D - 612 767 IPR012677 -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 191 427 - -
Mal5g3350 1016 Gene3D - 524 609 IPR012677 -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 395 427 - -
Mal5g3350 1016 PANTHER NUCLEOLIN-LIKE ISOFORM X1 918 1009 - -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 1 82 - -
Mal5g3350 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 525 610 IPR000504 GO:0003723
Mal5g3350 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 515 IPR000504 GO:0003723
Mal5g3350 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 595 IPR000504 GO:0003723
Mal5g3350 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 625 689 IPR000504 GO:0003723
Mal5g3350 1016 MobiDBLite consensus disorder prediction 728 758 - -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 130 149 - -
Mal5g3350 1016 CDD RRM_SF 527 590 - -
Mal5g3350 1016 CDD RRM_SF 447 515 - -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 193 357 - -
Mal5g3350 1016 SUPERFAMILY RNA-binding domain, RBD 446 590 IPR035979 GO:0003676
Mal5g3350 1016 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 421 782 - -
Mal5g3350 1016 PANTHER NUCLEOLIN-LIKE ISOFORM X1 421 782 - -
Mal5g3350 1016 MobiDBLite consensus disorder prediction 981 1004 - -
Mal5g3350 1016 Gene3D - 388 519 IPR012677 -
Mal5g3350 1016 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 918 1009 - -
Mal5g3350 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 515 IPR000504 GO:0003723
Mal5g3350 1016 SMART rrm1_1 624 699 IPR000504 GO:0003723
Mal5g3350 1016 SMART rrm1_1 446 519 IPR000504 GO:0003723
Mal5g3350 1016 SMART rrm1_1 526 603 IPR000504 GO:0003723
Mal5g3350 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 623 703 IPR000504 GO:0003723
Mal5g3350 1016 SUPERFAMILY RNA-binding domain, RBD 614 701 IPR035979 GO:0003676
Mal5g3350 1016 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3350 Mal-Chr5 97271228 97276117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3350 524 691 Eukaryotic Initiation Factors Gene Family AT1G71770 26.036 1.80e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3350 - - gmx:100784338 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3350 5 97271228 97276117 Mal5g3350 5 97271228 97276117 ECH