Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3331 ATGGCGGAGGAGAGAATCACTGGTGTGGTGCAATGGTTCAACAACACCAAAGGCTTCGGATTCATCAAACCTGATGATGAAAGCGAAGATCTTTTCGTTCATCAATCTGACATCAGATCCGAAGGTTTCCGCTCTCTTTTCGAAGGCGATCACGTTGAGTTCGTCATCGCCGACGGCGATAACGGCAAAACCAAAGCCGTTGATGTGACTGGTCCTAACGGCGCTCCTCTGCAGGTTAGGCAGGACAACTACGGCGGTGGAGGCGGTCGTGGATTTAGAGGCGGTGAGAGGCGGAATGGTGGTGGTGGTGCTGGTTGTTACACCTGTGGTGATACTGGTCACATTGCTAGGGATTGCGATCGTAATGATCGGAATGATCGGAACAATGGTGGTGGTGACCGTGCTTGTTATAATTGCGGCTCGGTTGGACATCTTGCTAGGGATTGCATGCGCGGAGGGAACAACAACGGTGGTGGCGGTGGATATGGCGGTGGTGGCATGGGAGGCACGTCTTGCTACAGGTGTGGTGGGGTTGGTCACATTGCAAGGGATTGCGCTACTCCCAGCAGCGGAGGAGGTGGTGGTGGTTGCTATAGCTGCGGTGAGGTGGGTCACATTGCTAGGGATTGCAGCATTGAAGGAGGAAGGTTTGATGGTGGCAATGGAAGGTTTGATAATGGCAACGGAAGGTTTGGTGGTGGCGGAGGCAACAGAAGGTTTGGCGGAGGCCGTGGAGGCGGTGATGGAGGAAAAAGCACATGCTTTAACTGTGGGAAGCCAGGGCATTTTGCAAGGGAGTGTGTTGAGGCTTCTGGTTGA 819 0.5372 MAEERITGVVQWFNNTKGFGFIKPDDESEDLFVHQSDIRSEGFRSLFEGDHVEFVIADGDNGKTKAVDVTGPNGAPLQVRQDNYGGGGGRGFRGGERRNGGGGAGCYTCGDTGHIARDCDRNDRNDRNNGGGDRACYNCGSVGHLARDCMRGGNNNGGGGGYGGGGMGGTSCYRCGGVGHIARDCATPSSGGGGGGCYSCGEVGHIARDCSIEGGRFDGGNGRFDNGNGRFGGGGGNRRFGGGRGGGDGGKSTCFNCGKPGHFARECVEASG* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3331 272 ProSiteProfiles Zinc finger CCHC-type profile. 197 210 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Mal5g3331 272 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SUPERFAMILY Retrovirus zinc finger-like domains 96 151 IPR036875 GO:0003676|GO:0008270
Mal5g3331 272 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Mal5g3331 272 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 167 - -
Mal5g3331 272 SUPERFAMILY Retrovirus zinc finger-like domains 235 268 IPR036875 GO:0003676|GO:0008270
Mal5g3331 272 Gene3D - 1 83 IPR012340 -
Mal5g3331 272 SMART csp_8 7 72 IPR011129 GO:0003676
Mal5g3331 272 SUPERFAMILY Retrovirus zinc finger-like domains 164 212 IPR036875 GO:0003676|GO:0008270
Mal5g3331 272 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 1 167 - -
Mal5g3331 272 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SMART c2hcfinal6 196 212 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SMART c2hcfinal6 253 269 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 Pfam Zinc knuckle 172 186 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 Pfam Zinc knuckle 196 211 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 Pfam Zinc knuckle 134 150 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 Pfam Zinc knuckle 253 267 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mal5g3331 272 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Mal5g3331 272 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 125 270 - -
Mal5g3331 272 PANTHER COLD SHOCK DOMAIN PROTEIN 2 125 270 - -
Mal5g3331 272 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mal5g3331 272 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mal5g3331 272 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mal5g3331 272 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mal5g3331 272 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mal5g3331 272 Gene3D - 129 158 - -
Mal5g3331 272 Gene3D - 94 128 - -
Mal5g3331 272 Gene3D - 194 216 - -
Mal5g3331 272 Gene3D - 165 193 - -
Mal5g3331 272 Gene3D - 242 272 - -
Mal5g3331 272 ProSiteProfiles Zinc finger CCHC-type profile. 172 185 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3331 Mal-Chr5 96769157 96769975 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mal5g3331 CSD 8.9e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3331 K09250 - gmx:106796585 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3331 5 96769157 96769975 Mal5g3331 5 96769157 96769975 ECH