Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3289 ATGGAGTTTATGGCAAATCCATGCCCTTTATTGAATTTCTTTGATAATTTCGTTGAGAGGGTCAAATGGGGTGCTAGTCTTGTCGTCTCAGTCATCATTGGGAACATATTTTCTGCAATCTTGACATTCTGCTTTGCATTTGTGGGAACTTTGTTGGGGGCTATGAATGGAGCTTTGATAGGCCAAAAAACAGAGAGTGGCTTCATTCGAGGTGCTGTTGTTGGTGCTATGTCAGGAGTTGTTTTCTCTATTGAAGTCTTTGAATGTTCTCTTGACCTTTGGTATTGTGATAATTCTGGAATTGGCTGTCTCTTATACTTGATTGATGTTATTACTAGCCTATTGAGTGGGAGACTTGTACATGAAAGGATAGGTCAAGCCTTGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGATGAAATGAGCTTTTATGAGTTTCAAAATATCTTTGACATTGGAGGTGACAGAGGCTTATCAAGAGCTTCAGTTGAAAAGATCCCAACAATCTCAATCACAAGTGACAACAATTTTGATGCTTCTGGTGATAGACTTTCATGTTCAGTTTGTATTCAGGATTTCCAAATTGGAGAGACAGTTAGAAGCTTGCCCCATTGTCATCATATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAGCATGGCTCGTGCCCATTATGCAGAAGAGATCTGTAA 696 0.4023 MEFMANPCPLLNFFDNFVERVKWGASLVVSVIIGNIFSAILTFCFAFVGTLLGAMNGALIGQKTESGFIRGAVVGAMSGVVFSIEVFECSLDLWYCDNSGIGCLLYLIDVITSLLSGRLVHERIGQALLSAVQSQMGADEMSFYEFQNIFDIGGDRGLSRASVEKIPTISITSDNNFDASGDRLSCSVCIQDFQIGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3289 231 CDD RING-H2_PA-TM-RING 186 228 - -
Mal5g3289 231 SMART ring_2 186 227 IPR001841 -
Mal5g3289 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Mal5g3289 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 231 IPR044523 -
Mal5g3289 231 Pfam Ring finger domain 185 228 IPR001841 -
Mal5g3289 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Mal5g3289 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 231 - -
Mal5g3289 231 SUPERFAMILY RING/U-box 185 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3289 Mal-Chr5 96181136 96184066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3289 16 231 C3H Transcription Factor Family AT5G66070 66.204 1.30e-99 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3289 - - gmx:100816939 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0972 6 14569792 14571256 Mal5g3289 5 96181136 96184066 PCT