Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3284 ATGGCTGATTCACCCCCTCGTAGGAATTCAAGGTCCCCTTCACCTTCATCCTGGAAAGCTCAATCGAGATCAAGATCAAGGTCGAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGTAAGGGAGCCCAATGCTACAAATCCTGGTAATACACTTTATGTTACTGGTCTATCATCAAGGGTCACTGACAGGGACCTAGAGGATCATTTTTCGAAGGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCATGAGGATGCTGAACGCTGTATCAAGCATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAGCGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGACTGAAAAATACTAGAGACTATGGCTCTCGTGGTGATCATCGTGGTGACCACCGTGGTGACTTTCGTGGTGACCATCGTGGTGACTATCGCGGTGACCATCGCGGTGACTATCGCGGTGACTATCGTAATGACCATCGAGGTGACAGGGGAAGGAATCGTGGTGGTTCTGGTCGTTTCGATTATTCAGATCGTAGATCTCCAAGGCGTTCACCATACCGTGGAGGCCATGATCAATCACCACAACGCTCACCCTATGTTGGGAGGTCAAGGAGGGAGAGATCTAGGTCCATTCCCCGTTCTCCTTATAGCCCAGACAGGAGATATGCTGGTGGACCTAGGTGA 801 0.4956 MADSPPRRNSRSPSPSSWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPVREPNATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGSRGDHRGDHRGDFRGDHRGDYRGDHRGDYRGDYRNDHRGDRGRNRGGSGRFDYSDRRSPRRSPYRGGHDQSPQRSPYVGRSRRERSRSIPRSPYSPDRRYAGGPR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3284 266 Gene3D - 3 146 IPR012677 -
Mal5g3284 266 MobiDBLite consensus disorder prediction 1 25 - -
Mal5g3284 266 MobiDBLite consensus disorder prediction 138 266 - -
Mal5g3284 266 SUPERFAMILY RNA-binding domain, RBD 53 171 IPR035979 GO:0003676
Mal5g3284 266 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 262 - -
Mal5g3284 266 CDD RRM_RBMX_like 61 140 - -
Mal5g3284 266 SMART rrm1_1 63 136 IPR000504 GO:0003723
Mal5g3284 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Mal5g3284 266 PANTHER RNA RECOGNITION MOTIF 2 262 - -
Mal5g3284 266 MobiDBLite consensus disorder prediction 239 253 - -
Mal5g3284 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Mal5g3284 266 MobiDBLite consensus disorder prediction 159 225 - -
Mal5g3284 266 MobiDBLite consensus disorder prediction 32 50 - -
Mal5g3284 266 MobiDBLite consensus disorder prediction 51 66 - -
Mal5g3284 266 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3284 Mal-Chr5 96044343 96047391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3284 31 144 Eukaryotic Initiation Factors Gene Family AT1G49760 28.070 6.03e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3284 K12897 - gmx:100800398 236.884