Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3246 ATGGGAGGTGAAGGCACCGTTGAGAATTCTTCGTCGGAATCGAAGACCGAAGTTAACATCAACGTTCGATGCTCTAATGGTACAAAGTATTCCGTTCAGGTTTCTCTCGATTCCACCGTTGGATCGTTTAAGGATCTCATTGCGCGTAACTGTGATATCCCTGCACAACAACAGCGTCTAATTTACAAGGGTCGTATATTGAAGGATGATCAAACTCTTCAAAGCTACGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGCACCTACCAATACAAGTGGTGGCACTGGCACCAATAGTGGTGGCACCAATACTACACCGAATAATGCAGCAGGCACTGGAGCTAATGATGTTGGGGGTTTAGGAGGGCTCGGTTTTGGAGCTTCGCTGTTTCCTGGACTAGGTACCAATGGAACTGGGGGGAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAAATGATGAACTCACCTGCTATGCAGAATCTAGTAAGTAATCCCGAGATCGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGAAACCCTGAGCTAGCACACGTACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCGGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTATGAAAACGTTCAAGAACCATTTTTGAATGCCACTACAATGGCCGGTAATACAGGACTTTTACCCAGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTCCCATACCCAATGCTAATCCACTTCCTAATCCTTGGTCCTCTACAGGAACTGGAGCTCCCCAAAATAACACCAGAAGATCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCAACTGGCTTAGGAGGGATGGGGTTGCCTGGCCTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACTCAATTAATGCAAAATCCAGCTATCTCACAGATGATGCAAAGTATGCTTTCCAATCCGCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGTGGCATGCCCGATTTAAATTCACTTAGAGATGTGATGCAAAATCCGGAGTTCCTTCGTTTATTTTCATCACCTGAGACATTGCAGCAACTGATGTCTTTCCAGCAAGCCCTTCTGTCTCAGCAACAATCAACACGGGAATCGGGTCAAACCGGTCAAACTGGTGGAGGGACTGGACCGTTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGCTCCCAATAGATCAAATGAACCACCAGAGCAACTGTATGCTACCCAGCTTACACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCCACTTCAGGAAATGTTCATGCAGCCGTTGAACGTCTTTTGGGGAACACTGGTCAGTAG 1605 0.4642 MGGEGTVENSSSESKTEVNINVRCSNGTKYSVQVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPTNTSGGTGTNSGGTNTTPNNAAGTGANDVGGLGGLGFGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHVLNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGLLPRDQSTNPSTTSSETTAGSPIPNANPLPNPWSSTGTGAPQNNTRRSTTGGDARQQAPTGLGGMGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQQSTRESGQTGQTGGGTGPFNNMGLEMLSSMFGGLGAGSLAAPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3246 534 PANTHER UBIQUILIN 8 534 - -
Mal5g3246 534 SMART uba_6 492 530 IPR015940 -
Mal5g3246 534 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 486 531 IPR015940 -
Mal5g3246 534 Pfam UBA/TS-N domain 492 528 IPR015940 -
Mal5g3246 534 Pfam Ubiquitin family 20 89 IPR000626 GO:0005515
Mal5g3246 534 CDD Ubl_Dsk2p_like 18 90 - -
Mal5g3246 534 MobiDBLite consensus disorder prediction 272 344 - -
Mal5g3246 534 Gene3D - 189 248 - -
Mal5g3246 534 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Mal5g3246 534 MobiDBLite consensus disorder prediction 436 461 - -
Mal5g3246 534 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 534 - -
Mal5g3246 534 SMART CBM 195 234 IPR006636 -
Mal5g3246 534 SMART CBM 393 428 IPR006636 -
Mal5g3246 534 SMART CBM 141 182 IPR006636 -
Mal5g3246 534 SMART CBM 335 388 IPR006636 -
Mal5g3246 534 MobiDBLite consensus disorder prediction 436 457 - -
Mal5g3246 534 CDD UBA_PLICs 492 530 - -
Mal5g3246 534 MobiDBLite consensus disorder prediction 272 333 - -
Mal5g3246 534 Gene3D - 474 534 - -
Mal5g3246 534 SMART ubq_7 18 89 IPR000626 GO:0005515
Mal5g3246 534 SUPERFAMILY Ubiquitin-like 8 102 IPR029071 -
Mal5g3246 534 Gene3D - 6 100 - -
Mal5g3246 534 SUPERFAMILY UBA-like 488 530 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3246 Mal-Chr5 95360190 95365382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3246 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.20e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3246 K04523 - gmx:100776447 775.393