Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3245 ATGGAAAATGATTCCATTAAATCTATATCACCAACTGATATGAGTCCCACTAATGGCCAATGTAGCTGTGGGAGTGATTCATGTTTGCAATCAAATTGTGATAGTCTCTTTAAGAGAGAAATTGGAGTTACTATCAACAATCAGAAGCCAAAAATTTCTGAAGATGAAGAAGCTGCACACAAACTGAAGGCCATTGCTGAATGTGTAAACATCAACGTTCGTCACTTCAATGGTTCCAAGTTTTCTGTTCAAGTTGCACTCGAATCCACAGTTGAATCCTTTAAGGAGCTTATCATTGGAAACTGTGACATTCCAACACAAAATCAACGACTCATTCACAAGGGCAAAATCTTGCAGAATGATCAATCCCTTCAAAGCTATGGTTTGGGAGAGAATCATACTGTCTATTTGGTTCGTTGTTTTGCACCCACCAATTCGAATGATGGGACTGACAATATCAATAACACAACAAGTGATGGTGTGGATGGTGAGAGGGATGGCTTTCTTGGACAAGGATCTCCAGATTTTGAACTAATGCAGCCTCGCCGTCCACTACATGCTTCCGTTCATCGTCGTTTAATACGAGAATTTCTAAGCACACCAGATATGCAGCACTTAATAATTAATCCTAACATATTATGGAATATTTTAACGAACAGTCAAGAACTATCAAGCATAGTTTTTGATCCCACCAGTGTGAGCCGGATTCTTGAAGATGCAAGGATCCCTGGGATTGTGCGCGAAATAAGGAGACTAGCTGACCTCGAACTGAACAGCGTTGAATCTATTCCTGGTGGATTCAACCTGTTGAGGTCCATTTATGAAGACATGGAAGAACCAAATGTCACTACAACGACTGGTATTAGACAAATTTCGGGGACTAATAATGACGGCCAAGCCAGGGACCAATCAAATAGTGACACAAATGCTGGTTCTTCCTTACCAAATACTACTCCACTTCCCAATCCGTGGCCTTTTACACGAATTGAAGGTGACCAGATCAGTAACATTCGAAGATCAACTAGAAGATCAAGAAGATCAACCACTGATTGGGATGATGTTATACAGCGCGAACCAATTATCTTACAACGAATTGATTTGTCCAACGTTGATAGCTTGTTGGGTGGAAGTATTATGCCAAATACTGATGGATCGACCCAATTAGTGCAAGAATTTACACCTTCCGACCCAGATCAACAATTGTCTTCCCAGCAAGATTCTATGTCTCAGCTTAATTACCAACAATCAACAGGCTTTGTTGGCTTTGCAGAGGCACCAGAGCAATTGTATGCCACTCAACTTTCACAGCTTCAAGAGATGGGATTCTCTGACACAGAAGAATGCTTAAGAGCTCTTGTTGCCACTTCAGGGGATGTTCAAGCAGCAGTTCAACGTCTTTCGAGGAACTCCAATCAGTAG 1419 0.413 MENDSIKSISPTDMSPTNGQCSCGSDSCLQSNCDSLFKREIGVTINNQKPKISEDEEAAHKLKAIAECVNINVRHFNGSKFSVQVALESTVESFKELIIGNCDIPTQNQRLIHKGKILQNDQSLQSYGLGENHTVYLVRCFAPTNSNDGTDNINNTTSDGVDGERDGFLGQGSPDFELMQPRRPLHASVHRRLIREFLSTPDMQHLIINPNILWNILTNSQELSSIVFDPTSVSRILEDARIPGIVREIRRLADLELNSVESIPGGFNLLRSIYEDMEEPNVTTTTGIRQISGTNNDGQARDQSNSDTNAGSSLPNTTPLPNPWPFTRIEGDQISNIRRSTRRSRRSTTDWDDVIQREPIILQRIDLSNVDSLLGGSIMPNTDGSTQLVQEFTPSDPDQQLSSQQDSMSQLNYQQSTGFVGFAEAPEQLYATQLSQLQEMGFSDTEECLRALVATSGDVQAAVQRLSRNSNQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3245 472 CDD UBA_PLICs 430 466 - -
Mal5g3245 472 Pfam UBA/TS-N domain 430 466 IPR015940 -
Mal5g3245 472 SMART ubq_7 69 140 IPR000626 GO:0005515
Mal5g3245 472 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 61 158 - -
Mal5g3245 472 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 163 411 - -
Mal5g3245 472 ProSiteProfiles Ubiquitin domain profile. 69 138 IPR000626 GO:0005515
Mal5g3245 472 MobiDBLite consensus disorder prediction 335 349 - -
Mal5g3245 472 Gene3D - 55 151 - -
Mal5g3245 472 SUPERFAMILY Ubiquitin-like 65 157 IPR029071 -
Mal5g3245 472 PANTHER UBIQUILIN 425 471 - -
Mal5g3245 472 PANTHER UBIQUILIN 163 411 - -
Mal5g3245 472 Gene3D - 423 468 - -
Mal5g3245 472 Pfam Ubiquitin family 71 138 IPR000626 GO:0005515
Mal5g3245 472 SUPERFAMILY UBA-like 425 470 IPR009060 GO:0005515
Mal5g3245 472 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 424 469 IPR015940 -
Mal5g3245 472 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 425 471 - -
Mal5g3245 472 PANTHER UBIQUILIN 61 158 - -
Mal5g3245 472 SMART uba_6 430 468 IPR015940 -
Mal5g3245 472 MobiDBLite consensus disorder prediction 281 317 - -
Mal5g3245 472 MobiDBLite consensus disorder prediction 281 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3245 Mal-Chr5 95349586 95354916 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3245 K04523 - gmx:100776447 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3245 5 95349586 95354916 Mal5g3245 5 95349586 95354916 ECH
Mal6g0920 6 13894040 13899131 Mal5g3245 5 95349586 95354916 PCT