Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3238 ATGCCGAAAGCTAAATCCGATTCCAAACCCGCTGATAGCCGGTTGAAGCGTAAGGGTGCTGGAACAGGAAGGAAACAGACGAAGAAAGCAGCGAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGTGCTTTTTTCGTGTTCATGTCTGATTTTAGAGAACAATATAAGAAAGATCATCCTAACAACAAATCCGTTGCCACTGTCGGAAAAGCTTGCGGCGAAGAATGGAAATCTATGTCTGAAGAAGATAAGGCTCCGTATGTTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGAGATAGCTACTCAGGCTTACAACAAGAAACTGGAGGGAAAAGATGAGGAAGATGGTTCTGACAAGTCAAAATCTGAAGTCAACGATGAAGATGAAGATGAGGATGATGATGATGAAGATGATGATGAGTGA 426 0.4319 MPKAKSDSKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVATVGKACGEEWKSMSEEDKAPYVARALKKKEEYEIATQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEDDDDEDDDE* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3238 141 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Mal5g3238 141 Gene3D High mobility group box domain 21 123 IPR036910 -
Mal5g3238 141 SMART hmgende2 36 107 IPR009071 -
Mal5g3238 141 MobiDBLite consensus disorder prediction 1 43 - -
Mal5g3238 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 IPR031061 -
Mal5g3238 141 CDD HMGB-UBF_HMG-box 37 99 - -
Mal5g3238 141 Coils Coil 95 115 - -
Mal5g3238 141 MobiDBLite consensus disorder prediction 1 19 - -
Mal5g3238 141 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 140 - -
Mal5g3238 141 MobiDBLite consensus disorder prediction 104 141 - -
Mal5g3238 141 MobiDBLite consensus disorder prediction 104 124 - -
Mal5g3238 141 SUPERFAMILY HMG-box 24 108 IPR036910 -
Mal5g3238 141 MobiDBLite consensus disorder prediction 125 141 - -
Mal5g3238 141 Pfam HMG (high mobility group) box 37 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3238 Mal-Chr5 95033561 95034737 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mal5g3238 HMG_box 1.7e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3238 K25507 K22507 gmx:100499992 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3238 5 95033561 95034737 Mal5g3238 5 95033561 95034737 ECH
Mal6g0899 6 13466444 13467443 Mal5g3238 5 95033561 95034737 ECH