Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3220 ATGACTCGCTCACTTAGAACATTACAATCAATTTCCTCCGCCGCACCACCACCGGACTCCGCCGCCTCATTAGAATCCGACTTCGTCGTAATCCTCGCCGCCCTCCTCTGCGCTCTCATCTCCGTCGTGGGTCTCACAGCCATCGCCCGCTGCGCCTGGCTCCGCCGCGCCCCCGTCGCCGGCGCCTCACCGGCGACGGCGGTGGCCAACAAAGGTCTCAAAAAGAAGGTTCTCAATTCACTTCCAAAATTCACCTACCTCGACAACACTCCCGGAAAATGGGTCGTCTCATCGGAGTGTGCCATTTGTTTATCTGAGTTTGCCGCCGGTGAAGAGGTCCGGGTGCTTCCTCAGTGTGGTCACGGATTCCACGTGGCGTGTGTTGACACGTGGCTTGGGTCACACTCTTCCTGCCCTTCTTGCCGTGCTCCGTTTGCCGTCGCTAGGTGTCAGAAATGCGGGCTGTATCAACCGACGCCTGCTGGAGAAGTTGCCGGAGAAACGGAGCAAAAGTCCACCGGCGGCGAGAATGTAGAAGTTGTTGTTAATGTTAATTGTAATGGTAACAGTGTTGATAGGCATAGCCACAGTGTTTATAATGGCTTCTTGCCTTAA 615 0.5545 MTRSLRTLQSISSAAPPPDSAASLESDFVVILAALLCALISVVGLTAIARCAWLRRAPVAGASPATAVANKGLKKKVLNSLPKFTYLDNTPGKWVVSSECAICLSEFAAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPAGEVAGETEQKSTGGENVEVVVNVNCNGNSVDRHSHSVYNGFLP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3220 204 MobiDBLite consensus disorder prediction 1 19 - -
Mal5g3220 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Mal5g3220 204 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 179 - -
Mal5g3220 204 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 179 - -
Mal5g3220 204 SMART ring_2 100 141 IPR001841 -
Mal5g3220 204 Pfam Ring finger domain 99 142 IPR001841 -
Mal5g3220 204 MobiDBLite consensus disorder prediction 1 21 - -
Mal5g3220 204 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mal5g3220 204 SUPERFAMILY RING/U-box 80 147 - -
Mal5g3220 204 CDD RING-H2_PA-TM-RING 99 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3220 Mal-Chr5 94478080 94478694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3220 1 178 C3H Transcription Factor Family AT1G76410 52.151 2.40e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3220 - - cam:101497131 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0876 6 13152370 13153014 Mal5g3220 5 94478080 94478694 PCT