Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3174 ATGGGATCCAATAGTAGCAAAGCCACTAGGAAGAGTAGTTCTAAGGGACTTAAAGGGTTTCATTCTTATTGTCTTGGAACATGTTCTGGATCTCAAGACAGTGATAATGAGGAACAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATGTTACATATGCTGATGGCAATCTATCTGACTCCGATGAGGTGAAATCGGAGTCTTTTAGAAATGTTAAAGCTGGTGACAGTGACAATACTTGTATGCCTATCATCAACCTTGATGAGTGGAGAAAAACAAGGACCCCCAACACTTTGTCTGGAAGCTGTACCAGCGCTGTTCACGCATCTTCAACTAATTCGTTGAATCCTACTAGTCGATTCCTTTCTCGGTTCGGCATCACTCCTAGTAATAAAAGATCCAGACTTAGCATATTTACCGGTTCAAGGTCATCGAGGCCTTGTCCTGTTTCTTCTACAAGACCCTCAATATTTGACAATGATGTTGAGCATAATCTACGTCCAGGACCTTGTAGCAGTTTGATTAACAGAAATGAAACAGCACGGTGTCATGAAGATACTCCTATTAATTTAAGGTCAAATGCCTCAGGATCAGGTTTGCCTTGCATTGGTGGCATTGGTGCAAGGGATGAGTTGGACATAAACTTATTTTCTCCGAGAATTCAAATGGAGACAGAACATACTGAGACTAGACATTTAGATCGGCGAAACGGAGCTCGAGAACAAGTTGAAGAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTCCTTCGTCGATCAACATTATCTGACCTTACCTTTTTCCCTCTGCAACAAGAGAGAGAAGTGAGAGACGATATTCAGAATACTCTAAGGCAAACATTGGAGGCAGATTCAAGAGTGTCACCATCGGATCATAGTGCTATTAGTTCTTCTACATCTGGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACTATGGCGTTGAGACCTCACAATTGCGAGAAGGTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGCAGAAGAAGAATACGGTCACAAGTTCGTTCTCTTCAGCGGTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAAAGATCGTGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGTCGATTCAGAAGCCGTGACACTAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTCTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCTGCACCTATCAATGTTGTGGATTCCTTGCCTGTCAAGTTATATGAGAAGTTTCATAAGCATCAAGAAGATGCTACACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTGCCTTGCCATCATGAATTTCATAGAACATGTATAGACAAATGGTTGAAGGAGATTCACAGGTGGATTCTTGGGTATGAAACACTGATACACCAAAATGGGAGAATGATCAGTACCATATACCAATACTCATGGAAAACTTTCATCATCATCATTATAGGAAACACATTTGATTGTTTTCATAATGATTCAACTTCAAGTTATAATAGTGGTATTAACAAATCCATTAATGCTACTATTGAGGAAGAAAAGTCCATAAGAGATCATGAAGATCTTTCCAACAACACTACCATTACCAATTAG 1785 0.4034 MGSNSSKATRKSSSKGLKGFHSYCLGTCSGSQDSDNEEQVCDQNKVNGSDVTYADGNLSDSDEVKSESFRNVKAGDSDNTCMPIINLDEWRKTRTPNTLSGSCTSAVHASSTNSLNPTSRFLSRFGITPSNKRSRLSIFTGSRSSRPCPVSSTRPSIFDNDVEHNLRPGPCSSLINRNETARCHEDTPINLRSNASGSGLPCIGGIGARDELDINLFSPRIQMETEHTETRHLDRRNGAREQVEENVRFSRTLSVGRLRDRVLRRSTLSDLTFFPLQQEREVRDDIQNTLRQTLEADSRVSPSDHSAISSSTSGYPPSSMSNSMFSNQNYGVETSQLREGRYQDLLEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRFRSRDTNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVDSLPVKLYEKFHKHQEDATQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRWILGYETLIHQNGRMISTIYQYSWKTFIIIIIGNTFDCFHNDSTSSYNSGINKSINATIEEEKSIRDHEDLSNNTTITN* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3174 594 MobiDBLite consensus disorder prediction 52 73 - -
Mal5g3174 594 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g3174 594 Pfam Ring finger domain 478 512 IPR001841 -
Mal5g3174 594 ProSiteProfiles Zinc finger RING-type profile. 479 509 IPR001841 -
Mal5g3174 594 MobiDBLite consensus disorder prediction 1 16 - -
Mal5g3174 594 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 515 - -
Mal5g3174 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 515 IPR013083 -
Mal5g3174 594 SUPERFAMILY RING/U-box 457 512 - -
Mal5g3174 594 CDD mRING-H2-C3H2C2D_ZSWM2 478 511 - -
Mal5g3174 594 Coils Coil 276 296 - -
Mal5g3174 594 MobiDBLite consensus disorder prediction 141 161 - -
Mal5g3174 594 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 515 - -
Mal5g3174 594 MobiDBLite consensus disorder prediction 295 321 - -
Mal5g3174 594 MobiDBLite consensus disorder prediction 141 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3174 Mal-Chr5 92687930 92692002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3174 213 514 C3H Transcription Factor Family AT5G45290 59.740 2.28e-102 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3174 - - cam:101492704 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3174 5 92687930 92692002 Mal5g3174 5 92687930 92692002 ECH