Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3164 ATGGCTGATGATGGTGAGGAACAACCTTTGTTCAGTAGCAAATTTGGTGTGGTACTACTTGCCATGGGTTCAGCTAGCTTTGTGGTAACAATGTACCATCTCATAGTCATTTGCTGCCGACACGCATCCGAACAAGCGTGGCAGCAGGAGCTACCGGCAACACAAACACCGAGCACCGAAGAGGGAGGTTTGGTTTCACATCAAATTCCATCCCACAAGTATGAGAAGAAGAATGATGATTGCGTGACTTGTACTGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGAACTATGCCTTCTTGTATGCACTCTTTCCATGTACCGTGCATTGATATGTGGCTCCTTTCACATCCCAATTGTCCTGTTTGCCGCGCTGATGCCACGCCCTCCCCGGTGATGCCTCGCCGTTTACCAGAGGTTGGGTCCGAGGTGAATGTTGATCAAGGCATAAATTTGGTGCAAATAGTTGTCACCCAAAACGAGTTGCAAAATGGGTTACCCATTGTCCGGTCCTAA 522 0.4808 MADDGEEQPLFSSKFGVVLLAMGSASFVVTMYHLIVICCRHASEQAWQQELPATQTPSTEEGGLVSHQIPSHKYEKKNDDCVTCTVCLGDFEEGEELRTMPSCMHSFHVPCIDMWLLSHPNCPVCRADATPSPVMPRRLPEVGSEVNVDQGINLVQIVVTQNELQNGLPIVRS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3164 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 135 IPR044675 -
Mal5g3164 173 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Mal5g3164 173 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 3 135 - -
Mal5g3164 173 SMART ring_2 84 125 IPR001841 -
Mal5g3164 173 Pfam Ring finger domain 83 126 IPR001841 -
Mal5g3164 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 133 IPR013083 -
Mal5g3164 173 SUPERFAMILY RING/U-box 74 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3164 Mal-Chr5 92520556 92521077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3164 22 130 C3H Transcription Factor Family AT5G17600 39.516 5.72e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3164 - - lja:Lj0g3v0111029.1 184.496