LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g3130	ATGGATGAGGTGGTTAGACCTGGTGTTAGTACTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTTCAGAGATACTGTTGACGAAACGGCGTCGTCTTCATCTTCTTCTGATTCAGGATGGCGTCCAAGGGAGCTTGCTTTTGCTCCATTTGTGCCGCGGGGCGAAGAACAACAACGAGAACGAGTTAATGCTGCTGGAAAGTTCTCAAAGTTGCGTGCTTTTGTTAGAAAACCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAAAGATTTTTGACCAGCCCATCTACTGGAGTGCTTAATGATGGCTTTGATAATGTGAACTCGGATCTTATTCTGACAGTGAATCTGGTCTTGACCCATTTAGAGAAAAGTAGAAGATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGAATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAACTGCTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGTTCCGTGAAGTCAGCAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTATTCCTATATTCAGAGTCGATATTATAGATCTCCCGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGACATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGGGCTTCAGAATTTGATCTTTTGAAAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTTCGGGACGCCAAAAACACTAGTAAATTCTTTAAGTGTATAGGGAGTCTCCAGAACATAGAAATCAGCGAGGGTTCCAACAATGGACGTGTTTATCAAGCATTGACAGAAGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAAACATATGAATCTTGAAGCAATTGTTACAAACTACCCCTACAGGAAAAACCTACCTAAGGAAGATATTGCCAAAGAAAGTCAAATACGATTGGCTCTTATTGACTTTTTGAGAGGGCTTGTTGAATTTGACCCTGCAAAACGCTGGTCACCCTTCCAGGCTTCAAAGCACCCTTTTATAACTGGGGAACCTTTCACTCACCCTTACAGACCTTCCCCTGAGACCCCTCACATTCCGGTAGTTCAAAACATCAAGGTTGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGCCTATCACCGAATGTTGCAGGAAAAAACAGAGCTTCCCTCTATAGCAGTCCACATTTTCAGATGGCGCAACATCCACCTGCTAATAGTTATGGCAGTGTAGGAAGCCATGGGAGCTACAATGATAGTGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATCGCTCCATCTGGGATGAACATGCACAGTCAGGGTGGTCTGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGATTTAAGTACCAACCTGGGAATGGGCTAGGTGTAAGTCCATCTGGCGGAAATTTCGCCCCCTTGCCTCTAGGTGCCAGCCCATCTCAATTTACTCCACCAAGTAACTATAGTCAGATTTCAGTTGGTTCGCCAGGACATTTTGGACCTACATCTCCTGCAAGAGGAGCTTCTCATGGATCACCTTTGGGCAAGACTGCTGCAGTCAGCCAGTTTAATAGAAGGAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAACCAGCATTTTCTTCACATTGGCATGGTCAATATCCTGATAGCTTTAGCCAAGCAGAGGGAACATCACATGCTCCTGGAAGTTCACCATCATATCAACAATCAAATATTAATCCTGGAAACTGGAAGCAGCGTGGAAGTGGAGGGGTGTCTGCTAATCAAAACATTCCATCCATGGTTATGCCTGGTTCTAATATGAACTCACAGTCAACGGAATTGATTCGTGACAATGTGGAGACAGGCTTTTCATTGCCTGATCCTGGAGATTGGGATCCTAATTATAGTGATGAACTACTTCTGCAAGAGGGTGGTTCAGATGAAAGCTTTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCCTCTGAACCATGGTCTGGATTTGGAAGACGAAATGGACCTGGTCAACCATTTTCTAATGTAGAGATGGGTAGCCCCCCAGCACATGAACTCCAAGCAGCATATATACCCTCTATGTCAAAGCCTTTCCATCTCACGCCTCATACTTCACAAAATTCTCCAAGTCGTTTTGGACACCAACCTGTTCAAAGATTTACACATGGTAGACCTCCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAATGTGGGCCCACGTTCTCCTAGGAATGCCTCATTCACCGGCAGTATGTCATGGGGGAGAAGAATGAATCCTCCTATCACAAGCATTCCTCCTATCTCAAACATGCCACCGACATCTCGTTCAAGAAAGGACTATGCAAGGGTGGACTAG	2889	0.4261	MDEVVRPGVSTSSCSSEAEQTQFRDTVDETASSSSSSDSGWRPRELAFAPFVPRGEEQQRERVNAAGKFSKLRAFVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGFDNVNSDLILTVNLVLTHLEKSRRYIVKDLLGHGTFGQVAKCWNSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSSVKSAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSNNGRVYQALTEEEYEARDLKKPSIGKEYFKHMNLEAIVTNYPYRKNLPKEDIAKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFITGEPFTHPYRPSPETPHIPVVQNIKVDNHPGGGHWFAAGLSPNVAGKNRASLYSSPHFQMAQHPPANSYGSVGSHGSYNDSVGLGSSYGSYGESSNMFAYYSPIAPSGMNMHSQGGLSMLGNSPDARRRFKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSNYSQISVGSPGHFGPTSPARGASHGSPLGKTAAVSQFNRRKNWGHSGSPQTQEPAFSSHWHGQYPDSFSQAEGTSHAPGSSPSYQQSNINPGNWKQRGSGGVSANQNIPSMVMPGSNMNSQSTELIRDNVETGFSLPDPGDWDPNYSDELLLQEGGSDESFLTTEFGRSMNLGSSEPWSGFGRRNGPGQPFSNVEMGSPPAHELQAAYIPSMSKPFHLTPHTSQNSPSRFGHQPVQRFTHGRPPQGSDWNQIKIQAPSGFSNVGPRSPRNASFTGSMSWGRRMNPPITSIPPISNMPPTSRSRKDYARVD*	963

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g3130	962	PANTHER	BNAC04G29850D PROTEIN	36	905	-	-
	Mal5g3130	962	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	1	42	-	-
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	8	41	-	-
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	681	759	-	-
	Mal5g3130	962	ProSitePatterns	Protein kinases ATP-binding region signature.	153	176	IPR017441	GO:0005524
	Mal5g3130	962	SMART	serkin_6	147	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g3130	962	Gene3D	Transferase(Phosphotransferase) domain 1	228	490	-	-
	Mal5g3130	962	Gene3D	Phosphorylase Kinase; domain 1	111	227	-	-
	Mal5g3130	962	ProSiteProfiles	Protein kinase domain profile.	147	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	646	663	-	-
	Mal5g3130	962	Pfam	Protein kinase domain	148	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g3130	962	CDD	PKc_YAK1	147	489	-	-
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	908	935	-	-
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	605	759	-	-
	Mal5g3130	962	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	36	905	-	-
	Mal5g3130	962	SUPERFAMILY	Protein kinase-like (PK-like)	143	511	IPR011009	-
	Mal5g3130	962	MobiDBLite	consensus disorder prediction	908	962	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g3130	Mal-Chr5	91604745	91615607	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g3130	138	376	MAP Kinase Gene Family	AT1G18150	33.071	1.22e-30	126

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Mal5g3130		Pkinase	1.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g3130	K18670		-	gmx:100792777	1624.37