Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3122 ATGTCCTTCGTGATATTTGAATCGATTCACAAATTCATATTGCACAATCGCATTCTTCATTCGCTCCTTGTAGCTGTAGCTGCTTCTCTCTTCACTCTTTGGGGAGGTAGTACGCATTGCATTGTTCGTTCACCTGTTGTAGTTTTAGCTGCTCCTCTCCTCATTCGCTCATTTTTCGAGGAGGCTTTCTTTGCTAATGCAAAGATGAGCTCGTTCTCCATTACGAGGAAAAAAACACCATTTCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAAGATGAGACTGCTCGCTTGTATGCCGAATTTGTAGAGTCATTTCAAGGGGATAACGCTCCGGGGTCAAAGACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAAACTGAAAGACGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGATATGTACCATCTTTTATACCGCCTCCATTGGCAACCAAGGGGAAAGAATCTGAAAAGAAAAAAGAGGAAGAAAAGCCAAAGGAAAAAGAGAAAGGAAAGTCAAGGAACATTGATCATTTTATGGAGGAGCTAAAGCAAGAGCAAGAGATGAGGGAGAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTCTGGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTCCCTGATGATTTTGATCCAAGTGGAAAGCTTCCAGGATCATTTGATGATGGTGATCCACAGACTACAAATCTTTACGTTGGAAATCTTTCACCTCAGGTTGATGAAAACTTCCTTCTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTTGCATTCATGAATAGAGCTGATGGACAGGCTGCTAAAGACGAAATGCAAGGAGTCGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCAGTTGCCCTTCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAACACTGTTATCTTGTCTGGCCCATCAGGTCCACCAGTAACATCTGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAAGCATGTAATTGATACAATGGCTTTGTATGTCTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAACCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCGAAGGAGCATACATATTATGTTTGGAGGCTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACCGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCTGCATTACCGATCGCTAAAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGGAGCAGGCGTGTAGAACCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAGGGGGTTATGGGGTTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTGCTGACGGAATCCTTAACACTTAAAGAAACCCCTATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCTTATCGCACCAAGTTTGAAGCAACGTTACCTGATGTAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTTAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTTCTTAGACCTGGGAACTCTGGTGTAGTACCATTCCACTCCATATGTGGTGACGCACCTGATATTGAGCAGAAGATCACTTCTGATGATGCTGTTGTTGGTGGCAAGACCGACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACCAAAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAATTGAAATATCCCCACAACCAAGCAAGTTCAGGGAAAAATTCAAGTAGTCAGCGAGAAACAAGTGCAGATCCTGAACCAATGGGATTGTCTGGATTGAATCATTATGCAGATGAAGATTTGCATTTGCAAGGCAAAGGTTATGCACCTTTAGCGCCAACCCTTCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAAGAGAAGAATGATCTGGTTCTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAGGGAAAGGTGGAAAAAATCTTGGGTTAAGCTACTCATCCTCTGGTAGTGAGAATGTGGGTGATGGCCTTACTAAAGCTGATGAGTCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTCTGATGCACCGGAAACGGCTGCAAGTGGAGTATGGGTTATCAGATTCTAGTGAAGATGGTCAAGGCAGTAGTAGGAGAACATCTTCAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGGCACCGCAGCCATAGTCCAAGTCGTAGTCCACAACAGAAACCGTCAACCAAAGACAGAGATAGAGAACGAGACAGAAAAAGAGATAAAAGTTATGATTTTGACAGTGATAGAGGAAGAGACCGGCTGAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATCATGATAGGGATAGAGGCAGGGACAGGGACAGAGACAGGAGAAGACGCGCGAAATAG 3111 0.4423 MSFVIFESIHKFILHNRILHSLLVAVAASLFTLWGGSTHCIVRSPVVVLAAPLLIRSFFEEAFFANAKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRLGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLKHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPIAKSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGVMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVVPFHSICGDAPDIEQKITSDDAVVGGKTDQDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYPHNQASSGKNSSSQRETSADPEPMGLSGLNHYADEDLHLQGKGYAPLAPTLPIPQPELKAFTKKEKNDLVLPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVGDGLTKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQVEYGLSDSSEDGQGSSRRTSSEKRDRHDVSRKRHRSHSPSRSPQQKPSTKDRDRERDRKRDKSYDFDSDRGRDRLREKSGSRERDDHDRDRGRDRDRDRRRRAK* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3122 1036 Coils Coil 85 105 - -
Mal5g3122 1036 Pfam Surp module 402 453 IPR000061 GO:0003723|GO:0006396
Mal5g3122 1036 MobiDBLite consensus disorder prediction 978 1029 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 827 892 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 484 509 - -
Mal5g3122 1036 Gene3D - 511 657 IPR008942 -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 934 1036 - -
Mal5g3122 1036 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 328 IPR000504 GO:0003723
Mal5g3122 1036 MobiDBLite consensus disorder prediction 748 785 - -
Mal5g3122 1036 CDD RRM_SR140 253 336 IPR035009 -
Mal5g3122 1036 Coils Coil 888 908 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 485 509 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 114 231 - -
Mal5g3122 1036 PANTHER RNA PROCESSING PROTEIN LD23810P 69 1031 - -
Mal5g3122 1036 SMART 558neu5 518 653 IPR006569 -
Mal5g3122 1036 Gene3D - 887 938 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 167 231 - -
Mal5g3122 1036 ProSiteProfiles SURP motif repeat profile. 403 446 IPR000061 GO:0003723|GO:0006396
Mal5g3122 1036 MobiDBLite consensus disorder prediction 129 148 - -
Mal5g3122 1036 SUPERFAMILY RNA-binding domain, RBD 247 342 IPR035979 GO:0003676
Mal5g3122 1036 SMART surpneu2 401 455 IPR000061 GO:0003723|GO:0006396
Mal5g3122 1036 MobiDBLite consensus disorder prediction 758 775 - -
Mal5g3122 1036 MobiDBLite consensus disorder prediction 848 862 - -
Mal5g3122 1036 Gene3D - 165 337 IPR012677 -
Mal5g3122 1036 Pfam CID domain 518 646 IPR006569 -
Mal5g3122 1036 SMART cwf21_2 887 936 IPR013170 -
Mal5g3122 1036 SUPERFAMILY ENTH/VHS domain 515 652 IPR008942 -
Mal5g3122 1036 SUPERFAMILY Surp module (SWAP domain) 376 458 IPR035967 GO:0003723|GO:0006396
Mal5g3122 1036 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 335 IPR000504 GO:0003723
Mal5g3122 1036 PANTHER - 69 1031 - -
Mal5g3122 1036 SMART rrm1_1 255 331 IPR000504 GO:0003723
Mal5g3122 1036 MobiDBLite consensus disorder prediction 827 844 - -
Mal5g3122 1036 Gene3D Surp module 389 458 IPR035967 GO:0003723|GO:0006396
Mal5g3122 1036 ProSiteProfiles SAP motif profile. 705 739 IPR003034 -
Mal5g3122 1036 ProSiteProfiles CID domain profile. 511 656 IPR006569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3122 251 331 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.63e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3122 K12842 - gmx:100776093 1628.61