Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3087 ATGGATCCTTTATCATTAACCCTTGAAATCCCTTCTTCTACTTATCCTTCCCAAACTCTTTCTCATGTTCCTATTTCCACCCCCAATTTTACTATTTCTCACCAAATCTCTAACATTTCATCCCTAAATCCCCAAACCCCCACTGTTTCCACCGGAGCCCTACTTCAGACGCTACTCGTCCCAAAACCTGAACCTTTTGATGATATATTCGCCGCTCAAGGTTCCCAACAACAACCCCGTTTCCCTCCTGGATATGAACCTAACGATCAATCCAACCTCTACGCTGAGTACTACCACAACCTACAACTTTTCAATTCTACTTTCAATGAATCCCTTTACCCTTTTCTCAGAATCGATGAATCCAACAATGCTCATGATTTTTCAATGGAGAATTTTCTCAATGTTTCTCACCTTGGACAAACTTCGAACCCTAATATGGGGGTGGATTATGTGGATGATAGAAATGATCAAGCTATTGTGGTTGTTCCAGAGAAACAAGATTTAAGTGCGGAGGTGGGTGAAGTTGGAAAAAAGGCAAGCCAAGTGATGGAGCTTGTGAGGGTTTCAGATCTAAATATAAAGGATCAGATGCATTTTCGCATGGTGATGAGGAGGACAAGGATGATTTATGATTCACTACGTGTGTTGGCGAGTATTGAGGAGGAGAAGAGAATGGTTGAGGAGAGGAAATTGGCTGCTGAGAATCGGGGGTTGTATTTGTATCGCGAAAAAAGGATAGTTGGAGCAATACCTGGAGTTTATGTTGGTGATGTTTTTTTGTATAGGAGAGAATTATGTGTAATTGGTTTGCATATGCAAATACAAGCTGGTATCGATTATCTTCCTAAAAGTAAATGTTACAATGGTGAACCAATTGCTACCAGTGTGGTTGTTTCAGGTGGTTATGAGGATGATGTGGAATGGGAAGATGGTGATGTTTTAATCTATACTGGCCATGGAGGAAAAGATATGAACTCCTCAAAGCAAATCTGTGATCAGAAATTGGAGGCTGGAAACCTTGCTATGGAAAGGAGTATGCATTACAAGATCGAGATAAGGGTTATTCGCGGGATGAAGTATGAAGGGATTGCATCCAATTCTGGTAAGATTTATGTTTATGATGGATTGTATAAGATTGTTGATTTATCGTATGATGTGGGAAAGTCTGGTTTTAGAGTTTATAAGTATGCACTAAGGAGAATTGAAGGACAACCTAAGATGGGTAGTGCTATACTCAAAGATGCTATGGAAATGAAGAAAAATGGGTTCAACTTTAAGCCGATGTTTTGTCTTTCTGTTGATATTTCAAACAATAGGGAGAATGTTCCTGTTAGGCTATTTAATGACATAGATGACAATCAAGAACCTCTTTATTATGAGTATCTACCGAGTACTAGTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAAAGTTACTGGTTGTGAATGTGTAGAGTCTTGTACTGATGGTTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCTTATAATCTACAGGGTTTTCTTGTGAGAGGGAAGCCTTTTCTTTTTGAATGTGGCCCTTTTTGCTCATGTCCTCCCAATTGTCAGAACCGTGTTGCACAAAAGGGTGTCAAATGTAGGTTGGAAGTGTTTAGGTCTGCGCAGACAGGTTGGGGAGTTAGGTCCTTGGACCTTATTGAGGCCGGAGCCTTTATCTGCGAGTATGTAGGGGTTATATTGACGAGGGAGCAAGCTCATATTTTGACAATGAATGGTGACTCGTTGATATACCCTAACCGGTTTTCAGAAAGATGGGTAGAATGGGGTGATTTATCTCGGATATACACTAATTATGTGCGACCATCATATCCATCAATTCATCCGTTAGATTTTTCTCTAGATGTTTCAACAATGCGAAATGTGGCTTGCTATATGAGCCATAGTTCGAGTCCAAATGTATTTGTTCAATATGTTTTGTATGATCACAACAATTTGATGTTCCCCCATGTCATGCTATATGCAATGGAGAACATCCCTCCTATGAGAGAACTGAGCATAGATTATGGCATCCCAGACGAGTGGGCGGGCAAGCTGTCTATATCTATGTAA 2091 0.4032 MDPLSLTLEIPSSTYPSQTLSHVPISTPNFTISHQISNISSLNPQTPTVSTGALLQTLLVPKPEPFDDIFAAQGSQQQPRFPPGYEPNDQSNLYAEYYHNLQLFNSTFNESLYPFLRIDESNNAHDFSMENFLNVSHLGQTSNPNMGVDYVDDRNDQAIVVVPEKQDLSAEVGEVGKKASQVMELVRVSDLNIKDQMHFRMVMRRTRMIYDSLRVLASIEEEKRMVEERKLAAENRGLYLYREKRIVGAIPGVYVGDVFLYRRELCVIGLHMQIQAGIDYLPKSKCYNGEPIATSVVVSGGYEDDVEWEDGDVLIYTGHGGKDMNSSKQICDQKLEAGNLAMERSMHYKIEIRVIRGMKYEGIASNSGKIYVYDGLYKIVDLSYDVGKSGFRVYKYALRRIEGQPKMGSAILKDAMEMKKNGFNFKPMFCLSVDISNNRENVPVRLFNDIDDNQEPLYYEYLPSTSFPQFVFHQSGKVTGCECVESCTDGCFCSMKNGGEFPYNLQGFLVRGKPFLFECGPFCSCPPNCQNRVAQKGVKCRLEVFRSAQTGWGVRSLDLIEAGAFICEYVGVILTREQAHILTMNGDSLIYPNRFSERWVEWGDLSRIYTNYVRPSYPSIHPLDFSLDVSTMRNVACYMSHSSSPNVFVQYVLYDHNNLMFPHVMLYAMENIPPMRELSIDYGIPDEWAGKLSISM* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3087 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 48 693 - -
Mal5g3087 696 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 114 695 IPR025794 GO:0016571
Mal5g3087 696 Pfam Pre-SET motif 435 532 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3087 696 ProSiteProfiles Pre-SET domain profile. 479 537 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3087 696 SMART set_7 540 689 IPR001214 GO:0005515
Mal5g3087 696 SUPERFAMILY SET domain 424 684 IPR046341 -
Mal5g3087 696 SUPERFAMILY PUA domain-like 241 411 IPR015947 -
Mal5g3087 696 Pfam SAD/SRA domain 247 404 IPR003105 -
Mal5g3087 696 SMART G9a_1 243 404 IPR003105 -
Mal5g3087 696 ProSiteProfiles SET domain profile. 540 683 IPR001214 GO:0005515
Mal5g3087 696 SMART preset_2 432 524 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal5g3087 696 Coils Coil 216 236 - -
Mal5g3087 696 Gene3D SET domain 409 695 IPR046341 -
Mal5g3087 696 ProSiteProfiles YDG domain profile. 248 400 IPR003105 -
Mal5g3087 696 Pfam SET domain 551 683 IPR001214 GO:0005515
Mal5g3087 696 Gene3D - 245 408 IPR036987 -
Mal5g3087 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 48 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3087 Mal-Chr5 90710307 90712592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3087 197 684 Su(var)3-9 homologs AT5G04940 38.812 4.23e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal5g3087 SAD_SRA 8.3e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3087 K11420 - gmx:100785015 787.719