Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3012 ATGACAACCAGCCTGAAGAAAAACCGGAAGAAGCGCGGCCACGTAAGCGCCGGCCACGGCCGAATCGGCAAACACCGCAAACACCCCGGCGGCCGAGGAAACGCCGGAGGAATGCACCACCACCGCATCCTCTTCGACAAATACCACCCCGGTTACTTCGGCAAAGTAGGAATGCGTTACTTTCACAAACTCCGCAACAAATTCCACTGCCCCACCGTTAACATCGATACTCTCTGGTCTCTTCTACCTCAAGAGGTGAAGGAAAAAGCGTCGAAATCGAAGGATGTTGCTCCGGTGATCGATGTTACGCAGTTTGGGTTTTTTAAGGTTCTTGGGAAAGGGGTTTTGCCGAAGGATCAGAGTGTTGTTGTTAAAGCGAAACTGGTTTCGAAGATTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTCTTCTTACTGCTTAA 447 0.5056 MTTSLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPTVNIDTLWSLLPQEVKEKASKSKDVAPVIDVTQFGFFKVLGKGVLPKDQSVVVKAKLVSKIAEKKIKEAGGAVLLTA* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3012 148 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 148 - -
Mal5g3012 148 MobiDBLite consensus disorder prediction 1 35 - -
Mal5g3012 148 Gene3D - 58 148 - -
Mal5g3012 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Mal5g3012 148 MobiDBLite consensus disorder prediction 1 38 - -
Mal5g3012 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Mal5g3012 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Mal5g3012 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Mal5g3012 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3012 Mal-Chr5 88567688 88568134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3012 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 82.432 2.05e-86 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3012 K02900 - ini:109180074 281.567