Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3007 ATGGAAACTTATGACGACAATGAAGAGATTGTGATGGGTGCTAAAGTTGACAAAGTGATGATCAACCCTTCACGAGTAAATATATCAACTCAAGTTGAAGGATCTCAAACGAATTCTCAAAGCAATATTTTGAAGGAAAATTTCAAGGAATGTTTGAAGAATCATGCTTCCAGTATTGGGGCTTATGCTCTTGATGGTTGTTGTGAATTCTTACCTGCTGGAGAAGAAGGCACCAACGAGTTTTTCAAATGTGCTGCTTGTGATTGTCACAAGAATTTTCATAGAAAAGAAACTGTTATTGTTGCCTTAGATCCGACACCTATTTCGTTCAATACCTCATGCCGTCCTCAGGCACCTACTCCTTCTGCAACATATTATCAGGCACCAACTGGTCACCATCACGTGACCGGATCATCGAGGGGAACAATAACTTCTCTACCTTTACCTTCATCTGGTGGGGTCAACATTTCGAGGCATGATCTTGAAGAAAATTTTCATGTTCATCATGTTGTTGGGCCTATCAATGGTGGTACTAGTGGTGGTAAAGAAGGATCGTCAAACTCTAAGAAGAGGTCCAGGACTAAGTTCACTCGTGAACAAAAGGAGAGGATGCTTGATTTTGCTGGGACACTGAGTTGGAAGATTCATAAGAAGGATGAGAATCTTGCTGAGGAGTTTTGTAATGAGATTGGGGTGAAGCTTCAAGTTTTTAAGGTCTGGGTACATAACAATAAGAATACCCTTGGTAAAAATCCCTAA 759 0.4045 METYDDNEEIVMGAKVDKVMINPSRVNISTQVEGSQTNSQSNILKENFKECLKNHASSIGAYALDGCCEFLPAGEEGTNEFFKCAACDCHKNFHRKETVIVALDPTPISFNTSCRPQAPTPSATYYQAPTGHHHVTGSSRGTITSLPLPSSGGVNISRHDLEENFHVHHVVGPINGGTSGGKEGSSNSKKRSRTKFTREQKERMLDFAGTLSWKIHKKDENLAEEFCNEIGVKLQVFKVWVHNNKNTLGKNP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3007 252 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Mal5g3007 252 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 246 IPR006455 -
Mal5g3007 252 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 48 97 IPR006456 -
Mal5g3007 252 Gene3D - 175 250 - -
Mal5g3007 252 SUPERFAMILY Homeodomain-like 176 250 IPR009057 -
Mal5g3007 252 MobiDBLite consensus disorder prediction 171 198 - -
Mal5g3007 252 Pfam ZF-HD protein dimerisation region 47 98 IPR006456 -
Mal5g3007 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 22 251 - -
Mal5g3007 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3007 Mal-Chr5 88438455 88439213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3007 45 248 ZF-HD Transcription Factor Family AT4G24660 43.204 4.00e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g3007 ZF-HD_dimer 7.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3007 - - mtr:MTR_2g076780 244.973