Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3004 ATGGAACAAGCACTTCAACGTCTCAACGGAATGTCTTCAATGGAAGAACAAGACAACCACCACCACCACCACCACAAAAAGACCCCCTCTTCCTCTTCCACCGCCGCAACAAACAAAAAGGGCGCCACGGTAAGATACCGTGGTGTCCGACGCCGTCCATGGGGCCGTTATGCTGCCGAGATAAGGGACCCACACTCAAAGGAACGCCGCTGGCTTGGAACCTTTGATACAGCCGAACAAGCCGCTTGTGCTTACGACTGCGCCGCCCGTGCCTTGCGCGGTTCTAAGGCCAGAACCAATTTCTTCTATCCCGAAACCAATGAACAACAAAAATCTCAACACCGCCATGTGAGCAAGTTCAACGGTGGTGATTCTCTTACCCATACTTGTTCAAACCCTAACCCATGTTTGGTTCCTTCTTTTGTTCAAAACAACCCTAATAATACTATTTCTTCTTCCTCCAATGTTAATGTTATACAACATGGTAGTTGTAGTGATTTTATTTGTGGAAATGATAATAATGTTGTTGAAGAAATTATTGATGAAGACTCGGATTTTTTTCCGAGAGAATCTACTGGTTTGTTGGAAGAGATAGTTCATAAGTTTATGAAAAGTACAAAAAAAGAAAAGAAGGTGAAAAATGAGAGTTATGGTTCAATTTCTCAACCAATATCTCATAACATTGTTCCTGTGGTTGAAGGTACCTTTGGTACTGTCTCTTTTGATCACCTACAAGGTTTTCCAATGCAGCAATTTGAGAGTTTTAATAATGGGTTTAACTTTAACAACACTGAGGTTTTGTGTGTTGGGGAAAATCATCATGCAGCAGAGTGCTCTATCATGGAAGATGTTTTTTATTATCCTCAACTTTTTAGTTCTTTTTGCAGCTAG 891 0.4164 MEQALQRLNGMSSMEEQDNHHHHHHKKTPSSSSTAATNKKGATVRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAARALRGSKARTNFFYPETNEQQKSQHRHVSKFNGGDSLTHTCSNPNPCLVPSFVQNNPNNTISSSSNVNVIQHGSCSDFICGNDNNVVEEIIDEDSDFFPRESTGLLEEIVHKFMKSTKKEKKVKNESYGSISQPISHNIVPVVEGTFGTVSFDHLQGFPMQQFESFNNGFNFNNTEVLCVGENHHAAECSIMEDVFYYPQLFSSFCS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3004 296 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 113 - -
Mal5g3004 296 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 113 - -
Mal5g3004 296 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 114 295 - -
Mal5g3004 296 MobiDBLite consensus disorder prediction 1 43 - -
Mal5g3004 296 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Mal5g3004 296 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Mal5g3004 296 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Mal5g3004 296 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 114 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3004 Mal-Chr5 88382125 88383015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3004 1 203 AP2-EREBP Transcription Factor Family AT1G24590 42.982 3.63e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g3004 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3004 - - mtr:MTR_8g069360 336.265