Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2994 ATGAACTCTCGAAGCAATAACTTCGAAAAAAAGTTCAAAGAGTGTAGAAAGAGTCACGCTTTAAGCATTGGTGGCTACGCTCTTGATGGTTGTGGTGAGTTTTTACCTGCTGGAATTGAAGGAACCAACGACTTTTTCAAATGTGCTGCCTGTACCTGTCATAGAAATTTTCATCGGAGGGAAACGGGTGTTGTTATTGAAGAGCATACTTCTTTTTCATTCAACAACCCCCATTGTTCTCAACCGACTCCCTTCTCAATAATCAACTTATAA 273 0.3993 MNSRSNNFEKKFKECRKSHALSIGGYALDGCGEFLPAGIEGTNDFFKCAACTCHRNFHRRETGVVIEEHTSFSFNNPHCSQPTPFSIINL* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2994 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 61 IPR006456 -
Mal5g2994 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 5 73 - -
Mal5g2994 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 11 61 IPR006456 -
Mal5g2994 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 73 - -
Mal5g2994 90 Pfam ZF-HD protein dimerisation region 11 62 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2994 Mal-Chr5 88134368 88134640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2994 11 62 ZF-HD Transcription Factor Family AT1G74660 63.462 1.42e-22 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g2994 ZF-HD_dimer 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2994 - - mtr:MTR_8g069080 152.91