Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2976 ATGGGAACTAAAGAAAATGATGAAGAGATAGTGATGGATAATAATACTGAACCAACAGGTTATGTTGAAATAGTTAAAATCTCGAATCACCGTGATGAACAAACTCTAATGAACTCTCGAAGCAATAGCTTCGAAAGAAAGTTCAAAGAGTGTAGAAAGAATCACGCTTTAAACATTGGAGGCTACGCACTTGATGGTTGTGGTGAGTTTTTACCTGCTGGAATTGAAGGAACCGTCAACTTTTTCAAATGTGCTGCTTGTAACTGTCATAGAAATTTTCATCGGAGAGAAACAAGTGTTGTTATTGAAGAGCATACTACTTTTCCATTCAACAACCCCCGTTGTTCTCAACTGACTCCCTTCTCAACGGTTTTTCAGACTCCGACCAGCTACCATCATGTGAGTGGGACGCCTAGGGAAAATCTTGAAGAAAATTTGCATGTTGTTGAGCCAATCAATTGTGTTGGTACTAATAGTGGTGGAGAAGGGTCATCAAAATCTAAGAAGAGGTTCAGATCTAAGTTCACTTGTGAGCAAAAGGAGAAGATGCTAGGTTTTGCTATAAAGTCAGGTTGGAAGATTCGTAAGCAAGATGAGAATGTTGTTGAAGAATTTTGCAACGAGATTGGTGTAAAGTGTCATGTTCTTAAGGTGTGGATGCATAACAACAAACACACCCTTGGAAATAAGCACTAG 696 0.3894 MGTKENDEEIVMDNNTEPTGYVEIVKISNHRDEQTLMNSRSNSFERKFKECRKNHALNIGGYALDGCGEFLPAGIEGTVNFFKCAACNCHRNFHRRETSVVIEEHTTFPFNNPRCSQLTPFSTVFQTPTSYHHVSGTPRENLEENLHVVEPINCVGTNSGGEGSSKSKKRFRSKFTCEQKEKMLGFAIKSGWKIRKQDENVVEEFCNEIGVKCHVLKVWMHNNKHTLGNKH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2976 231 SUPERFAMILY Homeodomain-like 158 227 IPR009057 -
Mal5g2976 231 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 47 97 IPR006456 -
Mal5g2976 231 Pfam ZF-HD protein dimerisation region 47 98 IPR006456 -
Mal5g2976 231 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 29 230 - -
Mal5g2976 231 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Mal5g2976 231 Gene3D - 155 229 - -
Mal5g2976 231 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 168 224 IPR006455 -
Mal5g2976 231 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2976 Mal-Chr5 87843518 87844213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2976 1 227 ZF-HD Transcription Factor Family AT4G24660 38.596 9.03e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mal5g2976 ZF-HD_dimer 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2976 - - mtr:MTR_8g069080 332.028