Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2968 ATGAGACCTTCAATGAAATCAAAAGATGCCATGAATGGATTGTTCTATGTTCATCAGCACAAGCCTGATTTCTGTGAATTATTCATCATCTATGGAGGGAAACAAGTTACACCAAGAGTGAAGAATGATGAGATAACCATGGAAGATGATAGTGGGGTCAAGGTTGCCAAAATAAGAGATAAGACAAGTTTTAAATATTGGATAGAAAGAATGTTCTGTGATAAAACCATTGTTTCCAACCAAAGAAGTTCTAGCACATCACCAACTACCTCAACAAATTTGGAGTCTCTTCTTGACAAAAATCAGTGGGAATATTATATGCAAGAAATTGACAATTATTTACAAGAGTTAATGTCTTTACATTTGGAGGAAGGAAGTTGTGGACAAGACAATGATGATTCCTTCTTTAGTCCAATTGAGCCATATGTCCAACAACTTAAAAATTCTGATAATAAGAGTGTTGAAGAAAAATTCGAGATCGTCATTGATAAACTGAATGAAGCTTATAATACCATCCAAATGGAAAGAAAAAAAGAAAAGGACAATTTGGAGAGACATGCAAAAGCTGAATGGGCTATTTATATATGCAATCGTCGGGAAGAAGCACTTGAATATCTAAAAAGTGAAGAAGTTACAAAAAGGGAAGAGCTAAAGAAGGAGCTTAATATAGAAAAAGACCAAATTCAAAAAGTTACAATGAATGTTGAAGAGAGCAAGCAAAGGCTTAACTCACTAGAAGAGCAACAACTAGACCTCAAAAATAAGCTTAATGTTTCCACATTGGAAATTTCAGAATGTGAAACCAAATTAGAGAAAATAATGACTGAAAGGACAAAGATGTTAATGGAGATAGAGGAGTTAAGTAAGCAAAGGGATGTGTTTAACAAAAGGATTAAATTTTTCAAAGAAAAGGATGCCACAGAAATGTGTAAAAAGCTAATAGAAAATGGTGGTAGTTTAAGAGAGTACACAAAGGAAGAGATCATAATGGCCAGTCACAATTTTTCAGAACACTTTAGGTTGAAATGTGGTGGGGAATGGAGTAATGTCTATAGAGGACACATTAATCATTCTAATGTTGCAATCAAGATGCTTCATTCTACTCTTGCCTTGTCCCAACATGATTTCCAAGCCAAGTTGAGGTCACTTGGTAGTATTCGACATCCTCATCTGATTGCTACATTGGGCTTCTGCTATGAGCCTAAATGCTTGGTTTTGGAATACATGCACAATGGAAGCTTGGAAGAAATGCTACTTTGCAAAACAAGAAGCAAAACCATAAGCTGGCAAGATTGCATAAGGATAGCCATAGAAGTTTGTTCTGGGCTGGGCTTTCTAAACTCATTTCAGCCCAGGCCCGTTATTCATTGTCATATTTCTCCATCCAACATCCTCCTAGACAACAATCTTGTTGCAAAGATCAAAGTGTTTGGTCTTCATGAGTGCAATAAAGAATGTAATGTTGGGTTAGATATGAAGGAAATAGGGGTTTTGTTGTTGCATTTATTGACTGGAAGAGGAAATTGGGTGACAATTGATATAGAAACCTTTTTTGATGAGATTGGTGAAGAATGGCCATTGGATGTAGCAAGTGAACTTTTGGGCTTAGTAATGAGGTGCATGTCCATGAATTGTGAGTGCAATGTGGAGATGAGCATAACAAGGGTCATGGAGGAACTCAAAGAGATCAAAAGAAAGGGTGAACACTCCAATAAAATGCCTAATGTTTTCCTTTGTCCAATTCTTCAAAAGGTAATGAGAAATCCACACATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACAATGGTTACAATCTGGGAATGAAATATCACCCAAAAGCTTGAGGCTGAAGAACACATTACTATTCCCTAATCATAACCTCCGTTCCCTAATTCAATATTGGCAAAGCAAGAGATCAGCTAAAGTTGTAAAATAG 1947 0.3621 MRPSMKSKDAMNGLFYVHQHKPDFCELFIIYGGKQVTPRVKNDEITMEDDSGVKVAKIRDKTSFKYWIERMFCDKTIVSNQRSSSTSPTTSTNLESLLDKNQWEYYMQEIDNYLQELMSLHLEEGSCGQDNDDSFFSPIEPYVQQLKNSDNKSVEEKFEIVIDKLNEAYNTIQMERKKEKDNLERHAKAEWAIYICNRREEALEYLKSEEVTKREELKKELNIEKDQIQKVTMNVEESKQRLNSLEEQQLDLKNKLNVSTLEISECETKLEKIMTERTKMLMEIEELSKQRDVFNKRIKFFKEKDATEMCKKLIENGGSLREYTKEEIIMASHNFSEHFRLKCGGEWSNVYRGHINHSNVAIKMLHSTLALSQHDFQAKLRSLGSIRHPHLIATLGFCYEPKCLVLEYMHNGSLEEMLLCKTRSKTISWQDCIRIAIEVCSGLGFLNSFQPRPVIHCHISPSNILLDNNLVAKIKVFGLHECNKECNVGLDMKEIGVLLLHLLTGRGNWVTIDIETFFDEIGEEWPLDVASELLGLVMRCMSMNCECNVEMSITRVMEELKEIKRKGEHSNKMPNVFLCPILQKVMRNPHIAADGFSYELEAIEQWLQSGNEISPKSLRLKNTLLFPNHNLRSLIQYWQSKRSAKVVK* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2968 648 Pfam U-box domain 574 642 IPR003613 GO:0004842|GO:0016567
Mal5g2968 648 Coils Coil 207 262 - -
Mal5g2968 648 Coils Coil 162 182 - -
Mal5g2968 648 PANTHER U-BOX KINASE FAMILY PROTEIN 1 643 - -
Mal5g2968 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 648 IPR013083 -
Mal5g2968 648 PANTHER OS02G0152300 PROTEIN 1 643 - -
Mal5g2968 648 CDD RING-Ubox_WDSUB1_like 577 615 - -
Mal5g2968 648 Gene3D Transferase(Phosphotransferase) domain 1 415 572 - -
Mal5g2968 648 Pfam Protein tyrosine and serine/threonine kinase 345 481 IPR001245 GO:0004672|GO:0006468
Mal5g2968 648 Coils Coil 270 304 - -
Mal5g2968 648 SUPERFAMILY Protein kinase-like (PK-like) 320 549 IPR011009 -
Mal5g2968 648 SUPERFAMILY RING/U-box 568 645 - -
Mal5g2968 648 Gene3D Phosphorylase Kinase; domain 1 319 408 - -
Mal5g2968 648 ProSiteProfiles Protein kinase domain profile. 336 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g2968 648 SMART Ubox_2 576 638 IPR003613 GO:0004842|GO:0016567
Mal5g2968 648 ProSiteProfiles U-box domain profile. 572 645 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2968 Mal-Chr5 87783223 87787611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2968 10 646 U-box Gene Family AT5G65500 40.179 2.74e-155 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mal5g2968 PK_Tyr_Ser-Thr 1.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2968 - - gmx:100795815 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g2968 5 87783223 87787611 Mal5g2968 5 87783223 87787611 ECH