Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2965 ATGGCTGGTTCTACTTCTACTAACTGGCTTACGTTTCCTTTGTCTCCAATTGAAATGCTGAACTCACATTTTCCTCAATTCCACACCGACTCTCATTACGATAACTTCTATGCCAGTGGTTGGATGATGAATTTCATGGATTCCTCGTCATCGCAAAATGATCAAAAACATGTTGTAACTGCTGAGAAGAATCGAAATTCTGGTTTCGTATATGATCTTAACTCTACTTCGGTGACTTTCAATGAGGAACAAGATCTTAAACCGGTTCTTGAATTTCAAGCGGAAACTCGTTCTATAGGTACTGTGTTAGGCGAGTCTTCTGAAGATGCTACGAAGAAGAAGAAGAAGAGTGCTGGAAATAAGAAAGGCATTGCTGCGGTGGATTCCAGAAACAGTACTACTCATAGCTATGGCCAAAGAACTTCAATTTACAGAGGAGTTACAAGGCACAGATGGACGGGTAGATTTGAAGCACATCTATGGGATAACAGCTGTAAACGAGAGGGTCAGGCAAGGAAAGGGCGTCAAGTGTATTTGGGTGGGTATGACAAGGAAGAAAAGGCAGCAAGGGCTTATGATTTGGCAGCATTGAAGTACTGGGGACCAACAGCTACCACAAACTTTCCTGTTTCCCATTATGCAAAGGAATTGGAGGAGATGAAAGATGCAGGAAAGCAAGAATTTATTGCTTCACTGCGAAGGAAAAGCACTGGTTTTTCGAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCACCATCAACAGGGTAGATGGCAAGCAAGAATTGGTCGAGTTGCTGGAAACAAAGACCTATACTTGGGAACATTTGCAACTGAAGTGGAAGCAGCAGAGGCATACGACATTGCAGCAATAAAGTTCAGAGGTGCAAACGCTGTAACCAATTTTGAGATAAGTAGGTACAATTTGGAGAATTCATCTCCAGTTTCTGGAGAAGCAAAACGCTTAAAACCTTCCGAAGAATCAGAGAAGAAAGCTCCTATGACTAGTACTAGTGAACAACCTCACAGTACAAATGTGGAAAGCAGCATCAATTTTCTGCCAAATGCTTCTGTACCCTATGATCCTGCAACACAATATTTCGTCCGCAACCCTTTCCACCATTTTCATCCTTCTATCAAAGTAGAAATTGGCACAGCAGAGTCTGCTGCAACTGCAACCAATGCTGCAGCTGAGTTCTTTCTTTGGCCCCGTCAATCCCATTGA 1224 0.4289 MAGSTSTNWLTFPLSPIEMLNSHFPQFHTDSHYDNFYASGWMMNFMDSSSSQNDQKHVVTAEKNRNSGFVYDLNSTSVTFNEEQDLKPVLEFQAETRSIGTVLGESSEDATKKKKKSAGNKKGIAAVDSRNSTTHSYGQRTSIYRGVTRHRWTGRFEAHLWDNSCKREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSHYAKELEEMKDAGKQEFIASLRRKSTGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEVEAAEAYDIAAIKFRGANAVTNFEISRYNLENSSPVSGEAKRLKPSEESEKKAPMTSTSEQPHSTNVESSINFLPNASVPYDPATQYFVRNPFHHFHPSIKVEIGTAESAATATNAAAEFFLWPRQSH* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2965 407 MobiDBLite consensus disorder prediction 312 347 - -
Mal5g2965 407 ProSiteProfiles AP2/ERF domain profile. 143 209 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 CDD AP2 244 305 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 SUPERFAMILY DNA-binding domain 244 305 IPR016177 GO:0003677
Mal5g2965 407 SUPERFAMILY DNA-binding domain 142 211 IPR016177 GO:0003677
Mal5g2965 407 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 SMART rav1_2 245 309 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 SMART rav1_2 143 215 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 Gene3D AP2/ERF domain 245 305 IPR036955 GO:0003700|GO:0006355
Mal5g2965 407 Gene3D AP2/ERF domain 143 211 IPR036955 GO:0003700|GO:0006355
Mal5g2965 407 ProSiteProfiles AP2/ERF domain profile. 245 303 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 MobiDBLite consensus disorder prediction 103 124 - -
Mal5g2965 407 CDD AP2 142 211 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 Pfam AP2 domain 245 295 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 Pfam AP2 domain 143 201 IPR001471 GO:0003700|GO:0006355
Mal5g2965 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 54 348 - -
Mal5g2965 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2965 Mal-Chr5 87673475 87678844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2965 27 407 AP2-EREBP Transcription Factor Family AT5G65510 53.616 1.65e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mal5g2965 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2965 K09285 - gmx:100777168 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0029 6 414459 418585 Mal5g2965 5 87673475 87678844 PCT