Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2949 ATGTTTGTGAGTCCCCACTATGCGGGAAGGGATGTAACCATGGAATTTCAAGAAGGTGAGACTTATAAAAAGGTGTTTGGGCCTGTATTTGTCTACCTTAACACTGTTTCTAGTGAGAATGATAAACTATCCCTCTGGTCAGATGCTGTGCAACAGTTATTCAAGGAAGCCCAAAGCTGGCCTTATGATTTTCCTCGATCAAAAGAATATTTTCCACCTAATCAAAGGAGAGCAGTATTTGGAAGATTACTAGTTCAAGATTGGTACTTCAAAGGAGGAAGGTTTCCATATACTAATAATGCTTATGTGGGTCTAGCTCTGCTTGGGGATGCAGGATCGTGGCAAAGAGAAAGCAAGGGCTATCAATTTTGGACTCGAACTAACGCCAAGGGATACTTTAAAATAAATAATATTGTGCCAGGTGACTATAATTTGTATGGTTGGGTCCCTGGATTCATTGGTGTTTACAAATATAATAGTACAATCACCATCACCCCAGGAGGAGTCATAAAATTAAATTCACTTGTATATAATCCTCCCAGAAATGGACCAACCATTTGGGAAATTGGGATCCCAGATCGCTTGGCTTCAGAGTTTAGGCAATATGGATTGTGGGAACGTTACACTTATCTATATCCATATGATGATCTTGTTTACATTGTGGGTGTTAACAATTATAAGGATTGGTTTTTTGCTCATGTTACAAGCAGAAGAACAGGAAATAAGACATATGAGCCAACGACATGGCAGATTATATTTGAACATAAAAATGACATAATCAGTGGAAACTACACACTGCAACTGGCCTTGGCTAGCGCTGCGGATGCTAACCTACAGGTTCGTTTCAATGACCCTAGCGTAGATCAACCTCACTTTGCCACAAGGCGCATAGGAAGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATCGGCTGTTCAGCATTGATGTGCCAAGTAACCTCCTTGTGAAAGGAAAGAAGATCATCTATCTAAGGCAGTCCAAAGCCAATACTCCTTTCCAAGGAGTTATGTATGATTATATCCGCTTAGAACGACCACCAACAACTTGA 1077 0.4048 MFVSPHYAGRDVTMEFQEGETYKKVFGPVFVYLNTVSSENDKLSLWSDAVQQLFKEAQSWPYDFPRSKEYFPPNQRRAVFGRLLVQDWYFKGGRFPYTNNAYVGLALLGDAGSWQRESKGYQFWTRTNAKGYFKINNIVPGDYNLYGWVPGFIGVYKYNSTITITPGGVIKLNSLVYNPPRNGPTIWEIGIPDRLASEFRQYGLWERYTYLYPYDDLVYIVGVNNYKDWFFAHVTSRRTGNKTYEPTTWQIIFEHKNDIISGNYTLQLALASAADANLQVRFNDPSVDQPHFATRRIGRDNAIARHGIHGLYRLFSIDVPSNLLVKGKKIIYLRQSKANTPFQGVMYDYIRLERPPTT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2949 358 SUPERFAMILY Starch-binding domain-like 119 174 IPR013784 GO:0030246
Mal5g2949 358 CDD RGL4_C 187 353 - -
Mal5g2949 358 SUPERFAMILY Galactose-binding domain-like 182 353 IPR008979 -
Mal5g2949 358 Gene3D - 99 174 - -
Mal5g2949 358 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 357 - -
Mal5g2949 358 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 357 - -
Mal5g2949 358 Pfam Polysaccharide lyase family 4, domain II 99 171 IPR029413 -
Mal5g2949 358 Pfam Polysaccharide lyase family 4, domain III 185 352 IPR029411 -
Mal5g2949 358 CDD RGL4_M 75 175 IPR029413 -
Mal5g2949 358 Gene3D - 182 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2949 Mal-Chr5 87456370 87459526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2949 2 355 Polysaccharide Lyase AT4G38030 55.556 1.28e-136 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2949 K18195 - gmx:100776664 559.296