Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2945 ATGAAGATGAAGGTGTTAACTAAGAAGAACAATAACAATGTTATCTTCTTTTGGTGGTTTGGAATTATTTTGCAACTCTGTTTCTTGCTATGTGCTTGTTCTCAGAAGACATCATTAAGAGGAGGATCAAAGAAGATCAATAGCTTGGGATCAACATCAATAGTTAAGATGAATACAGAAGACCATCAACAGTTGGTTGTTGACAATGGCATTTTTTCTGTGACTTTGTCAAGACCTGAGGGGCACATCCTTGAAATATCGTATAATGGAATTGACAACATTCTTGAATCTGAAAATGAAGAAGACGACAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAGAGCGTAGTACCTTTCAGAGAATCGAAGGAACAAAATTTTCAGTTATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTCAAGATCATGGACATCTTCCATGAGTGGCACAAATGTCCCCATAAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCTGGATTTTATTCATATGCAATATTTGATCGTCCTGAAGGAATGCCAGCAGTTGAGGTTGATCAAATTAGATATGTTTTCAAACTAAATAAACACAGGTTCAAGTACATGGCATTATCTGATACAAGGCAAAGAAACATGCCAGCAATGAAAGATAGAGAAACAGGTAAAGAACTAGCTTATCCAGAAGCAGTTCTATTAACCAAACCAATTAATCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAATATAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTAATCCACCCGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTCCGCAATGGTGGGCCCATTAAGCAAGATCTTACTTCTCATGTTGGGCCCATTACACTCTCGATGTTTGTGAGCACCCACTATGCTGGAAAGGAAGTAACCATGGCATTTGAAGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCTGTGTTTGTCTACCTTAACTCTGATTCAAGCGAAAATGATAATGTAACCCTTTGGTCAGATGCTGTGCAACAGTTATCCAAGGAAGTCCAGAGTTGGCCTTACGATTTTCCTCAATCACAAGATTTTTTTCCACCCAATAAACGAGGAGCAGTATTGGGAAGATTACTAGTCCAGGATTGGTACTTCAAAGGAGGGAGATTTCAATTAACTAATGCTTATTTGGGTCTAGCCTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAATTTTGGACTCGAACCGACGCCAACGGATACTTTAAAATAAATAATATTGTGCCAGGTGACTATAATTTGTATGGTTGGGTCCCTGGATTCATTGGTGATTACAAATATAATGGTACAATCACCATTACCCCAGGAGGAGTGGTAAACTTAAATTATCTTATATATCATCCTCCAAGAAATGGACCAACCCTTTGGGAAATTGGGATTCCAAATCGCTTGGCTTCAGAATTTCATGTACCAGATCCTTATCCTACTCTCATGAACAAATTATACACCGTACAACGCAGAGACAAGTTTAGACAATATGGATTGTGGGAACGTTACACAGATATATATCGAAATGATGATCTTGTTTACACTGTCGGTGTCGACAAGTATAGAGATTGGTTTTTTGCTCATGTTACAAGAAGCAAAGGAAATAAAACATATGAACAAACAACATGGCAGATTATATTTGAACATGAAAGTGACATAATCAGTGGAAACTACACACTACAATTGGCTTTGGCTAGTGCTGCTGATGCTGATCTACAGGTACGGTTCAATGATCCTAGCATATATCCACCTCACTTTGCCACAGGGCACATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATTGGTTATTCAGCATTGATGTGCCAAGTAATCTTCTTGTAAAAGGAAAGAACATCATCTATTTGAGACAATCAAAAGCAATTAGTCCATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCACCTACAACATGA 2055 0.3835 MKMKVLTKKNNNNVIFFWWFGIILQLCFLLCACSQKTSLRGGSKKINSLGSTSIVKMNTEDHQQLVVDNGIFSVTLSRPEGHILEISYNGIDNILESENEEDDRGYFDVVWNEPGERSTFQRIEGTKFSVIAADENMVELSFSRSWTSSMSGTNVPINIDKRYIFRSGDSGFYSYAIFDRPEGMPAVEVDQIRYVFKLNKHRFKYMALSDTRQRNMPAMKDRETGKELAYPEAVLLTKPINPQFRGEVDDKYQYSCENIDNTVHGWISFDSNPPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNSDSSENDNVTLWSDAVQQLSKEVQSWPYDFPQSQDFFPPNKRGAVLGRLLVQDWYFKGGRFQLTNAYLGLALPGDAGSWQRESKGYQFWTRTDANGYFKINNIVPGDYNLYGWVPGFIGDYKYNGTITITPGGVVNLNYLIYHPPRNGPTLWEIGIPNRLASEFHVPDPYPTLMNKLYTVQRRDKFRQYGLWERYTDIYRNDDLVYTVGVDKYRDWFFAHVTRSKGNKTYEQTTWQIIFEHESDIISGNYTLQLALASAADADLQVRFNDPSIYPPHFATGHIGGDNAIARHGIHGLYWLFSIDVPSNLLVKGKNIIYLRQSKAISPFQGVMYDYIRLERPPTT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2945 684 Pfam Rhamnogalacturonate lyase family 55 248 IPR010325 -
Mal5g2945 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 683 - -
Mal5g2945 684 Gene3D - 380 479 - -
Mal5g2945 684 Pfam Polysaccharide lyase family 4, domain III 490 678 IPR029411 -
Mal5g2945 684 Gene3D - 57 357 IPR014718 GO:0030246
Mal5g2945 684 CDD RGL4_C 492 679 - -
Mal5g2945 684 SUPERFAMILY Starch-binding domain-like 379 480 IPR013784 GO:0030246
Mal5g2945 684 SUPERFAMILY Galactose mutarotase-like 59 349 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mal5g2945 684 Pfam Polysaccharide lyase family 4, domain II 405 476 IPR029413 -
Mal5g2945 684 CDD RGL4_M 381 478 IPR029413 -
Mal5g2945 684 Gene3D - 488 679 - -
Mal5g2945 684 CDD RGL4_N 58 347 - -
Mal5g2945 684 SUPERFAMILY Galactose-binding domain-like 487 679 IPR008979 -
Mal5g2945 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 683 - -
Mal5g2945 684 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2945 Mal-Chr5 87390803 87399387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2945 51 683 Polysaccharide Lyase AT1G09910 55.416 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g2945 K18195 - gmx:100776664 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal6g0753 6 11123540 11130028 Mal5g2945 5 87390803 87399387 PCT