LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g2939	ATGGCTTCAAGTTTCTCTACCCTTCCCCTCTTCTTCTTGTCCTTCATTTTATTCCATTTTCATGCTTATTCAATTCACTTCCAAATTCCCCGTTTTAATCCAAATGAAGCAAACATAATCTACCAAGGTTCTGCAGGACCAGTTGATGGAAAAGTTGATTTTGCAATCAATCCAAATTATGTATGTCAAGTTGGATGGGCCTTGTATTCCAAAAAGGTGTTACTTTGGGACTCAAAAACAGGTCAACTCACTGACTTCACAACTCATTACACTTTCATAATCAACACTCAAGATAAATCTTCATATGGCCATGGCCTTGCCTTTTTCTTAGCTGCTTATGGATTTGAAATCCCACCTAATTCCTCTGGTGGCTTGATGGGACTATTTAATACCACAACCATGTTTTCATCAAGTAACCAAATTGTTCTTGTGGAGTTTGATTCATATCCAAATGTTGAATGGGATGATACAACACAACATGTGGGAATCAACAATAATTCAATCAAATCATCTCTATCAACACCTTGGAATGCTAGTCTACATAGTGGAGACACTGCTGAGGTATGGATTAGCTACAATTCCACCACCAAGAATTTAACTGTATCTTGGCAATATCAAACCACCTCTAGTCCTCAAGAAAAAACTAATCTTTCTTATCAAATTGATTTAATGAAAGTTTTACCTGAATGGGTTACTATTGGATTTTCTGCTGCAACTGGTTCCATTGGAGAATTAAATAATCTTTTGTCATGGGAATTTAATTCCAATTTGGAGAAAAGTGATGATGATAATACCAAAGAGACAAGATTGGTTGTGATATTAACAGTCTCTTTTGGGGTTGTAGTATTAGGAGTGGGAGCATTTGTAGCATATGTGATACTGTTGAGGAAAAGAAAAAGAAGTGAAAAGCAAAAGGAAGAGGCTATGCATTTGACATCAATGAATGATGACCTTGAAAGAGGAGCAGGGCCAAGAAGGTTCACCTACAAAGAACTTGATTTAGCAACCAATAACTTCTCTAAGGATAGAAAGTTAGGTCAAGGTGGTTTTGGAGCTGTTTATAAAGGCTACTTTGTTGATTTAGATATACAAGTTGCTGTAAAGAAAATATCAAGAGGCTCAAGACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTCATTAGTCAATTGAGACATAGGAATCTTGTGAAATTGTTGGGTTGGTGCCATGACAAAGGTGAGTTTCTACTTATTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACGCCTCTTTCTTGGGGTGTAAGGCACAAAATAGCTCTTGGATTGGCCTCTGGTTTGCTCTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTTAAGCTTGGTGATTTTGGATTGGCTAAATTAATGGACCATGAACTTGGGCCTCAAACAACTGGGCTGGCTGGAACATTCGGCTATCTAGCTCCTGAATATGTGAGCACTGGTAGGGCGAGTAAAGAGTCAGATGTGTATAGTTTTGGGATAGTTGTCTTGGAGATAACTACTGGAAATAAAGCAACTGAAGTTATGAAGGAAAAAGATGAAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTTGTGGCAATGGATGAGAATTTGAGAAAAGATTTTGATGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTAAGGCCATCAATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGTTGCATTGCCAAATCTTCCACCAAAGAGACCTGTTGCAACCTATCATGCTCCTACACCGTCTGTTAGCTCAGTTGATGCTTCCATAACCAATAGCCTTCAAGATGGTCGTTAA	1950	0.3744	MASSFSTLPLFFLSFILFHFHAYSIHFQIPRFNPNEANIIYQGSAGPVDGKVDFAINPNYVCQVGWALYSKKVLLWDSKTGQLTDFTTHYTFIINTQDKSSYGHGLAFFLAAYGFEIPPNSSGGLMGLFNTTTMFSSSNQIVLVEFDSYPNVEWDDTTQHVGINNNSIKSSLSTPWNASLHSGDTAEVWISYNSTTKNLTVSWQYQTTSSPQEKTNLSYQIDLMKVLPEWVTIGFSAATGSIGELNNLLSWEFNSNLEKSDDDNTKETRLVVILTVSFGVVVLGVGAFVAYVILLRKRKRSEKQKEEAMHLTSMNDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVYKGYFVDLDIQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLIYEFMPNGSLDSHLFGKRTPLSWGVRHKIALGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVLEITTGNKATEVMKEKDEEKGMIEWVWDHYGRGELLVAMDENLRKDFDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVALPNLPPKRPVATYHAPTPSVSSVDASITNSLQDGR*	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g2939	649	SMART	serkin_6	339	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g2939	649	MobiDBLite	consensus disorder prediction	626	649	-	-
	Mal5g2939	649	Pfam	Protein kinase domain	339	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g2939	649	ProSitePatterns	Protein kinases ATP-binding region signature.	345	369	IPR017441	GO:0005524
	Mal5g2939	649	Gene3D	Transferase(Phosphotransferase) domain 1	416	630	-	-
	Mal5g2939	649	PANTHER	PUTATIVE-RELATED	20	644	-	-
	Mal5g2939	649	ProSiteProfiles	Protein kinase domain profile.	339	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mal5g2939	649	CDD	lectin_legume_LecRK_Arcelin_ConA	25	257	IPR001220	GO:0030246
	Mal5g2939	649	PANTHER	-	20	644	-	-
	Mal5g2939	649	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	271	IPR013320	-
	Mal5g2939	649	Gene3D	-	22	281	-	-
	Mal5g2939	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Mal5g2939	649	MobiDBLite	consensus disorder prediction	629	649	-	-
	Mal5g2939	649	CDD	STKc_IRAK	345	610	-	-
	Mal5g2939	649	Gene3D	Phosphorylase Kinase; domain 1	324	415	-	-
	Mal5g2939	649	ProSitePatterns	Legume lectins alpha-chain signature.	227	236	IPR000985	-
	Mal5g2939	649	Pfam	Legume lectin domain	25	266	IPR001220	GO:0030246
	Mal5g2939	649	SUPERFAMILY	Protein kinase-like (PK-like)	323	628	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g2939	Mal-Chr5	87338656	87340605	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g2939	10	628	Receptor kinase-like Gene Family	AT5G10530	59.200	0.0	750

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Mal5g2939		Pkinase	4.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g2939	-		-	mtr:MTR_8g067690	996.112